View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_185 (Length: 291)

Name: NF10855A_low_185
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_185
NF10855A_low_185
[»] chr4 (1 HSPs)
chr4 (7-291)||(55334720-55335004)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 7 - 291
Target Start/End: Complemental strand, 55335004 - 55334720
Alignment:
Q  7 taaataataagtttggttcactcgtctttaggggttaactatgataatacaatgtttgttgatggcatatcccactcgattaagaggtcatttcttatgt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55335004 taaataataagtttggttcactcgtctttaggggttaactatgataatacaatgtttgttgatggcatatcccactcgattaagaggtcatttcttatgt 55334905  T
Q  107 tttatccttatgttttggtcttcgatttgctcgtaacaaggcttgttttgaaaataaaaatattgagatgaatactacggttaaaaatatttatagtttt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55334904 tttatccttatgttttggtcttcgatttgctcgtaacaaggcttgttttgaaaataaaaatattgagatgaatactacggttaaaaatatttatagtttt 55334805  T
Q  207 gtcgtgatactgagtgagtttccagtaaaaatataataataatannnnnnnacggtggccatgtccaaaatccttttagctagga 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  55334804 gtcgtgatactgagtgagtttccagtaaaaatataataataatatttttttacggtggccatgtccaaaatccttttagctagga 55334720  T

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