View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_189 (Length: 287)
Name: NF10855A_low_189
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_189 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 8e-98; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 94 - 282
Target Start/End: Complemental strand, 35971918 - 35971730
Alignment:
| Q |
94 |
tagaaatttcaaggacacttaccttctgaaacaagtcaactgaaattggcaattccctcaaagcaaattttgcagtagcctgctctgcctcttctatagt |
193 |
Q |
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| T |
35971918 |
tagaaatttcaaggacacttaccttctgaaacaagtcagctgaaattggcaattccctcaaagcaaatttcgcagtagcctgctctgcctcttctatagt |
35971819 |
T |
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| Q |
194 |
atttaaaaatgttgggctttcaaatgattttccatcaataacaacaatagctttataacgaaagtcatgaggtagcccctcagttttaa |
282 |
Q |
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| T |
35971818 |
atttaaaaatgttgggctttcaaatgattttccatcaataacaacaatagctttataacgaaagtcatgaggtagcccctcagttttaa |
35971730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 31 - 250
Target Start/End: Complemental strand, 35951908 - 35951689
Alignment:
| Q |
31 |
tatctaacattcaacatctagttattaatttaatgatcataaaatgtcaatttagaatcacattagaaatttcaaggacacttaccttctgaaacaagtc |
130 |
Q |
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| T |
35951908 |
tatctaacatccaaaatctagttatcaatttaatgatcataaaatgacaatttggaatcacataagaaatttcaaggacacttaccttctgaaacaagtc |
35951809 |
T |
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| Q |
131 |
aactgaaattggcaattccctcaaagcaaattttgcagtagcctgctctgcctcttctatagtatttaaaaatgttgggctttcaaatgattttccatca |
230 |
Q |
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| T |
35951808 |
aactgaaatcggcaattccctcaaagcaatttttgcagcagcctgttctgcctcttttatagagttgaaaaatgtagggctttcaaatgatttctcatca |
35951709 |
T |
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| Q |
231 |
ataacaacaatagctttata |
250 |
Q |
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| T |
35951708 |
ataacaacagtagctttata |
35951689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 157 - 284
Target Start/End: Complemental strand, 35956295 - 35956168
Alignment:
| Q |
157 |
caaattttgcagtagcctgctctgcctcttctatagtatttaaaaatgttgggctttcaaatgattttccatcaataacaacaatagctttataacgaaa |
256 |
Q |
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|||||||||||| ||||||||||||||||| |||||| || ||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
35956295 |
caaattttgcagcagcctgctctgcctcttttatagtgttgaaagatgttgggctttcaaatgatttcccatcaataacaacaatagctttatagcgaat |
35956196 |
T |
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| Q |
257 |
gtcatgaggtagcccctcagttttaatt |
284 |
Q |
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| T |
35956195 |
gtcatgaggtggcccctcagttttaatt |
35956168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 35958553 - 35958495
Alignment:
| Q |
161 |
ttttgcagtagcctgctctgcctcttctatagtatttaaaaatgttgggctttcaaatg |
219 |
Q |
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| T |
35958553 |
ttttgcagcagcctgctctgcctcttctatagtgtttaaaaatgttgggatttcaaatg |
35958495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 274
Target Start/End: Complemental strand, 35968886 - 35968784
Alignment:
| Q |
172 |
cctgctctgcctcttctatagtatttaaaaatgttgggctttcaaatgattttccatcaataacaacaatagctttataacgaaagtcatgaggtagccc |
271 |
Q |
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|||||||| |||||| | |||| || |||||| | |||||||| |||||||| |||||||||||||| |||| |||||| ||| |||||||| | |||| |
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| T |
35968886 |
cctgctcttcctcttttttagtgttgaaaaatatagggctttcgaatgatttcgcatcaataacaacactagccttataatgaacgtcatgagatggccc |
35968787 |
T |
|
| Q |
272 |
ctc |
274 |
Q |
| |
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||| |
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| T |
35968786 |
ctc |
35968784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 35978966 - 35978860
Alignment:
| Q |
170 |
agcctgctctgcctcttctatagtatttaaaaatgttgggctttcaaatgattttccatcaataacaacaatagctttataacgaaagtcatgaggtagc |
269 |
Q |
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||||||||||||||||| | |||||| ||| |||| ||||||| ||| ||||| ||||||| |||||| |||| ||||| |||| |||| ||||| || |
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| T |
35978966 |
agcctgctctgcctcttttctagtatcgaaagatgtagggcttttaaacgatttcccatcaacaacaactgtagcattatagcgaatgtcacgaggtggc |
35978867 |
T |
|
| Q |
270 |
ccctcag |
276 |
Q |
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||||||| |
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| T |
35978866 |
ccctcag |
35978860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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