View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_191 (Length: 287)

Name: NF10855A_low_191
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_191
NF10855A_low_191
[»] chr3 (9 HSPs)
chr3 (69-280)||(10976065-10976275)
chr3 (115-222)||(52752595-52752702)
chr3 (111-219)||(20934662-20934770)
chr3 (159-220)||(14240959-14241020)
chr3 (111-219)||(42400051-42400158)
chr3 (115-214)||(52754691-52754790)
chr3 (99-219)||(11655090-11655207)
chr3 (169-218)||(39186670-39186719)
chr3 (162-218)||(35686144-35686200)
[»] scaffold0021 (1 HSPs)
scaffold0021 (69-280)||(128655-128865)
[»] chr6 (9 HSPs)
chr6 (111-219)||(16278747-16278855)
chr6 (111-219)||(7428150-7428258)
chr6 (99-222)||(15618093-15618213)
chr6 (99-169)||(26597308-26597378)
chr6 (115-220)||(3531695-3531800)
chr6 (157-218)||(9450041-9450102)
chr6 (161-218)||(21055826-21055883)
chr6 (180-226)||(26597114-26597160)
chr6 (171-220)||(23409749-23409798)
[»] chr2 (6 HSPs)
chr2 (111-219)||(19041008-19041116)
chr2 (111-219)||(39838754-39838862)
chr2 (160-220)||(45054455-45054515)
chr2 (115-218)||(27879393-27879496)
chr2 (190-222)||(5788527-5788559)
chr2 (162-218)||(31964137-31964193)
[»] chr1 (10 HSPs)
chr1 (111-219)||(1992733-1992841)
chr1 (111-219)||(30001408-30001516)
chr1 (111-219)||(40946831-40946939)
chr1 (99-222)||(27341802-27341915)
chr1 (115-222)||(31089968-31090075)
chr1 (115-222)||(31420944-31421050)
chr1 (115-220)||(21467389-21467494)
chr1 (155-220)||(34159873-34159938)
chr1 (154-219)||(39047974-39048039)
chr1 (116-220)||(19102420-19102524)
[»] chr8 (10 HSPs)
chr8 (115-222)||(16221261-16221368)
chr8 (115-220)||(361329-361434)
chr8 (169-218)||(23685875-23685924)
chr8 (115-221)||(23684360-23684466)
chr8 (149-222)||(14714868-14714941)
chr8 (115-220)||(35226324-35226429)
chr8 (171-220)||(37250828-37250877)
chr8 (169-218)||(45247143-45247192)
chr8 (115-175)||(30255005-30255065)
chr8 (123-199)||(35225236-35225312)
[»] chr5 (5 HSPs)
chr5 (115-222)||(19906201-19906308)
chr5 (113-222)||(24541335-24541442)
chr5 (115-157)||(5682554-5682596)
chr5 (115-220)||(23570285-23570390)
chr5 (154-222)||(2260537-2260605)
[»] chr4 (6 HSPs)
chr4 (115-214)||(6555628-6555727)
chr4 (99-222)||(13240407-13240520)
chr4 (115-214)||(315445-315544)
chr4 (162-218)||(13917832-13917888)
chr4 (160-222)||(11559814-11559876)
chr4 (107-148)||(22192944-22192985)
[»] scaffold0169 (1 HSPs)
scaffold0169 (161-222)||(4846-4907)
[»] scaffold0036 (1 HSPs)
scaffold0036 (115-222)||(49875-49982)
[»] chr7 (6 HSPs)
chr7 (115-206)||(18347998-18348089)
chr7 (108-217)||(6676290-6676399)
chr7 (161-218)||(18290916-18290973)
chr7 (123-222)||(24708764-24708863)
chr7 (171-220)||(26247074-26247123)
chr7 (111-204)||(43989994-43990087)
[»] scaffold0211 (1 HSPs)
scaffold0211 (115-214)||(16061-16160)
[»] scaffold0284 (2 HSPs)
scaffold0284 (115-177)||(532-594)
scaffold0284 (162-218)||(8030-8086)
[»] scaffold0051 (1 HSPs)
scaffold0051 (161-218)||(17942-18000)
[»] scaffold1750 (1 HSPs)
scaffold1750 (111-168)||(1-58)
[»] scaffold0377 (1 HSPs)
scaffold0377 (174-215)||(13685-13726)
[»] scaffold0159 (1 HSPs)
scaffold0159 (190-222)||(32900-32932)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 69 - 280
Target Start/End: Complemental strand, 10976275 - 10976065
Alignment:
Q  69 aatgtccttcgctttcatgcagannnnnnnattcaacctctatatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgt 168  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10976275 aatgtccttcgctttcatgcagatttttttattcaacctctatatcatttcaaattccttcacttttgatatttcgtgggatcttacaatgaaaaaatgt 10976176  T
Q  169 aaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaattgagtgatannnnnnnnaatgagtctaatattgtggtagcatagtttcc 268  Q
    | |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  10976175 agatgtgttatgatgtgttgacaaaatacatgtgtattagatattttaaattgagtgata-tttttttaatgagtctaatattgtggtagcatagtttcc 10976077  T
Q  269 taatattgttgg 280  Q
    ||||||| ||||    
T  10976076 taatatttttgg 10976065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 52752595 - 52752702
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattt 214  Q
    ||||| |||||||||||||| | | ||| |||| || | |||||| |||||| || |||||||||| || |||  |||||||||||||||||||| ||||    
T  52752595 atttctaattccttcactttaggtttttggtgggatatgacaatggaaaaatatagatgtgttatgctgagtttacaaaatacatgtttattagacattt 52752694  T
Q  215 taaattga 222  Q
    ||||||||    
T  52752695 taaattga 52752702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 20934770 - 20934662
Alignment:
Q  111 tatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagat 210  Q
    |||||||| ||||||||||||||||| |||||| ||| ||||| ||||  ||||||||| |||| || |||||  ||| |||||||||| |||||| |      
T  20934770 tatcatttaaaattccttcacttttgttatttcatgggatcttgcaatagaaaaatgtagatgtattttgatgaattgacaaaatacatatttattgggc 20934671  T
Q  211 attttaaat 219  Q
    |||||||||    
T  20934670 attttaaat 20934662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 14241020 - 14240959
Alignment:
Q  159 gaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaatt 220  Q
    ||||||||||| | |||||||| || |||| |||||||||||||||||||| ||||||||||    
T  14241020 gaaaaaatgtagaagtgttatgttgagttgacaaaatacatgtttattagacattttaaatt 14240959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 42400158 - 42400051
Alignment:
Q  111 tatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagat 210  Q
    |||||||| ||||||||||| ||||| |||||| ||| ||||| |||| | |||||||| |||| || ||||| |||| |||||||||| |||||| |      
T  42400158 tatcatttaaaattccttcatttttgttatttcatgggatcttgcaat-agaaaatgtagatgtattttgatgagttgacaaaatacatatttattgggc 42400060  T
Q  211 attttaaat 219  Q
    |||||||||    
T  42400059 attttaaat 42400051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 52754691 - 52754790
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattt 214  Q
    |||| ||||| ||| ||||||| | ||| |||  |||| | |||| ||||||||| |||||||||| || ||||||||||||||| ||||||||| ||||    
T  52754691 attttaaattactttacttttggtctttggtgtgatctgaaaatggaaaaatgtagatgtgttatgctgagttggcaaaatacatatttattagacattt 52754790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 11655207 - 11655090
Alignment:
Q  99 attcaacctctatatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaataca 198  Q
    |||||||||||||   ||||||||||||||   ||||| | ||| |||| ||| |||||| |||||||||| ||||||| || |  |||| |||| ||||    
T  11655207 attcaacctctatt--atttcaaattcctttgtttttggtctttggtgggatcctacaataaaaaaatgtagatgtgttctgctaagttgacaaa-taca 11655111  T
Q  199 tgtttattagatattttaaat 219  Q
    ||||||||||| |||||||||    
T  11655110 tgtttattagacattttaaat 11655090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 39186670 - 39186719
Alignment:
Q  169 aaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaa 218  Q
    ||||| |||||||||  ||  |||||||||||||||||||||||||||||    
T  39186670 aaatgagttatgatgactttacaaaatacatgtttattagatattttaaa 39186719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 35686144 - 35686200
Alignment:
Q  162 aaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaa 218  Q
    ||||| || |||||||||||||  ||  |||||||||||||||||||| ||||||||    
T  35686144 aaaatatacatgtgttatgatgaattaacaaaatacatgtttattagacattttaaa 35686200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 69 - 280
Target Start/End: Complemental strand, 128865 - 128655
Alignment:
Q  69 aatgtccttcgctttcatgcagannnnnnn-attcaacctctatatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatg 167  Q
    |||||||||||||||||||||||        |||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  128865 aatgtccttcgctttcatgcagattttttttattcaacctctat--catttcaaattccttcacttttgatattttgtggaatcttacaatgaaaaaatg 128768  T
Q  168 taaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaattgagtgatannnnnnnnaatgagtctaatattgtggtagcatagtttc 267  Q
    || |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  128767 tagatgtgttatgatgttttgacaaaatacatgtttattagatattttaaattgagtgatattttttttaatgagtctaatattgtggtagcatagtttc 128668  T
Q  268 ctaatattgttgg 280  Q
    |||||||| ||||    
T  128667 ctaatatttttgg 128655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 16278855 - 16278747
Alignment:
Q  111 tatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagat 210  Q
    |||||||| ||||||||||||||||| |||||| ||| ||||| ||||  ||||||||| |||| || ||||| |||| |||||||||| |||||| |      
T  16278855 tatcatttaaaattccttcacttttgttatttcatgggatcttgcaatagaaaaatgtagatgtattttgatgagttgacaaaatacatatttattgggc 16278756  T
Q  211 attttaaat 219  Q
    |||||||||    
T  16278755 attttaaat 16278747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 7428258 - 7428150
Alignment:
Q  111 tatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagat 210  Q
    |||||||| ||||||||||||||||| |||||| ||| ||||| ||||  ||||||||| |||| || ||||| |||| |||||| ||| |||||| |      
T  7428258 tatcatttaaaattccttcacttttgttatttcatgggatcttgcaatagaaaaatgtagatgtattttgatgagttgacaaaatgcatatttattgggc 7428159  T
Q  211 attttaaat 219  Q
    |||||||||    
T  7428158 attttaaat 7428150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 222
Target Start/End: Complemental strand, 15618213 - 15618093
Alignment:
Q  99 attcaacctctatatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaataca 198  Q
    |||||||||||||   ||||||| | | |||||||||||||||| | | ||||||||||| ||| |||||| |||||||||||||  ||| ||| ||| |    
T  15618213 attcaacctctatt--atttcaagtgcattcacttttgatattttg-gaaatcttacaataaaagaatgtagatgtgttatgatgaattgacaagataaa 15618117  T
Q  199 tgtttattagatattttaaattga 222  Q
    | ||||||||| ||||||||||||    
T  15618116 tatttattagacattttaaattga 15618093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 26597378 - 26597308
Alignment:
Q  99 attcaacctctatatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgta 169  Q
    ||||||||||| | | |||||||||||||||||||||| |||||||| | |||||||  || |||||||||    
T  26597378 attcaacctctttgtgatttcaaattccttcacttttgctatttcgtcggatcttacggtggaaaaatgta 26597308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 220
Target Start/End: Complemental strand, 3531800 - 3531695
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattt 214  Q
    |||||||||||||||||||||| ||||| |||  || | |||||  |||| |||| | |||||||| || |||| ||||||| |||||||||| || |||    
T  3531800 atttcaaattccttcacttttggtatttggtgccatgtgacaattgaaaattgtagaagtgttatgttgggttgacaaaatatatgtttattacatgttt 3531701  T
Q  215 taaatt 220  Q
     |||||    
T  3531700 aaaatt 3531695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 9450102 - 9450041
Alignment:
Q  157 atgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaa 218  Q
    ||||||||||| |||||||||||| |  |||| ||||||||| |||||||||| ||||||||    
T  9450102 atgaaaaaatgaaaatgtgttatgctaagttgacaaaatacacgtttattagacattttaaa 9450041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 21055883 - 21055826
Alignment:
Q  161 aaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaa 218  Q
    ||||||||| |||||||||||||  ||  |||||||||||||||||||| ||||||||    
T  21055883 aaaaatgtacatgtgttatgatgaattaacaaaatacatgtttattagacattttaaa 21055826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 26597160 - 26597114
Alignment:
Q  180 gatgtgttggcaaaatacatgtttattagatattttaaattgagtga 226  Q
    ||||||||| ||||||||| |||||||| |||||||||||| |||||    
T  26597160 gatgtgttgacaaaatacaagtttattaaatattttaaattaagtga 26597114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 23409798 - 23409749
Alignment:
Q  171 atgtgttatgatgtgttggcaaaatacatgtttattagatattttaaatt 220  Q
    ||||||||||||| |||  |||||||||||||||||||| |||| |||||    
T  23409798 atgtgttatgatgagttcacaaaatacatgtttattagacatttaaaatt 23409749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 19041008 - 19041116
Alignment:
Q  111 tatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagat 210  Q
    |||||||| ||||||||||||||||| |||||| ||| ||||| ||||  ||||||||| |||| || ||||| |||| |||||||||| |||||| |      
T  19041008 tatcatttaaaattccttcacttttgttatttcatgggatcttgcaatagaaaaatgtagatgtattttgatgagttgacaaaatacatatttattgggc 19041107  T
Q  211 attttaaat 219  Q
    |||||||||    
T  19041108 attttaaat 19041116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 39838862 - 39838754
Alignment:
Q  111 tatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagat 210  Q
    |||||||| ||||||||||||||||| |||||| ||| ||||| ||||  ||||||||| |||| || ||||| |||| |||||||||| |||||| |      
T  39838862 tatcatttaaaattccttcacttttgttatttcatgggatcttgcaatagaaaaatgtagatgtattttgatgagttgacaaaatacatatttattgggc 39838763  T
Q  211 attttaaat 219  Q
    |||||||||    
T  39838762 attttaaat 39838754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 45054515 - 45054455
Alignment:
Q  160 aaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaatt 220  Q
    |||||||||| |||||||||| || |||| |||||||||||||||||||||||||||||||    
T  45054515 aaaaaatgtagatgtgttatgttgagttgacaaaatacatgtttattagatattttaaatt 45054455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 27879393 - 27879496
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattt 214  Q
    |||| ||||||||||| ||||| ||||  |||| || | |||||| |||||||| ||| ||||||| || |||| |||||||||| ||||||| ||||||    
T  27879393 attttaaattccttcaattttggtattcggtggcatatgacaatggaaaaatgtcaatatgttatgttgagttgacaaaatacatatttattaaatattt 27879492  T
Q  215 taaa 218  Q
    ||||    
T  27879493 taaa 27879496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 5788559 - 5788527
Alignment:
Q  190 caaaatacatgtttattagatattttaaattga 222  Q
    |||||||||||||||||||| ||||||||||||    
T  5788559 caaaatacatgtttattagacattttaaattga 5788527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 31964193 - 31964137
Alignment:
Q  162 aaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaa 218  Q
    |||||| | ||||| ||||||| |||  |||||||||||||||||||| ||||||||    
T  31964193 aaaatgcacatgtgctatgatgagtttacaaaatacatgtttattagaaattttaaa 31964137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 1992733 - 1992841
Alignment:
Q  111 tatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagat 210  Q
    |||||||| ||||||||||||||||| |||||| ||| ||||| ||||  ||||||||| |||| || ||||| |||| |||||||||| |||||| |      
T  1992733 tatcatttaaaattccttcacttttgttatttcatgggatcttgcaatagaaaaatgtagatgtattttgatgagttgacaaaatacatatttattgggc 1992832  T
Q  211 attttaaat 219  Q
    |||||||||    
T  1992833 attttaaat 1992841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 30001516 - 30001408
Alignment:
Q  111 tatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagat 210  Q
    |||||||| ||||||||||||||||| |||||| ||| ||||| ||||  ||||||||| |||| || ||||| |||| |||||||||| |||||| |      
T  30001516 tatcatttaaaattccttcacttttgttatttcatgggatcttgcaatagaaaaatgtagatgtattttgatgagttgacaaaatacatatttattgggc 30001417  T
Q  211 attttaaat 219  Q
    |||||||||    
T  30001416 attttaaat 30001408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 40946831 - 40946939
Alignment:
Q  111 tatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagat 210  Q
    |||||||| ||||||||||||||||| |||||| ||| ||||| ||||  ||||||||| |||| || ||||| |||| |||||||||| |||||| |      
T  40946831 tatcatttaaaattccttcacttttgttatttcatgggatcttgcaatagaaaaatgtagatgtattttgatgagttgacaaaatacatatttattgggc 40946930  T
Q  211 attttaaat 219  Q
    |||||||||    
T  40946931 attttaaat 40946939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 27341802 - 27341915
Alignment:
Q  99 attcaacctctatatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaataca 198  Q
    ||||||||||| |||||||| ||||||| || |||||| ||||| |||| ||||||||||| |||||| ||          |||| |||| |||||||||    
T  27341802 attcaacctctctatcattttaaattccatcgcttttggtattttgtgggatcttacaatggaaaaatata----------gatgcgttgacaaaataca 27341891  T
Q  199 tgtttattagatattttaaattga 222  Q
    || |||||||||||||||||||||    
T  27341892 tgcttattagatattttaaattga 27341915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 31090075 - 31089968
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattt 214  Q
    ||||||||||| |||||||||||||||| |||  |||  ||| |  ||| || || |||||||||| ||  |||  ||||||||||||||||||||||||    
T  31090075 atttcaaattcattcacttttgatatttggtgtgatccgacagtagaaacatatagatgtgttatgttgaattgataaaatacatgtttattagatattt 31089976  T
Q  215 taaattga 222  Q
    ||||||||    
T  31089975 taaattga 31089968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 31420944 - 31421050
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattt 214  Q
    |||| |||||| |||||||||| ||||   |||| ||| |||||| ||||||||| ||||| | |  |  |||| |||||||||||||||||||| ||||    
T  31420944 attttaaattctttcacttttggtattcgatgga-tctaacaatgtaaaaatgtagatgtgctctagtaagttgacaaaatacatgtttattagacattt 31421042  T
Q  215 taaattga 222  Q
    ||||||||    
T  31421043 taaattga 31421050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 220
Target Start/End: Complemental strand, 21467494 - 21467389
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattt 214  Q
    |||||||||||||||||||||| | ||| || |||  | |||||| ||||||| | ||||||| || |  |||| ||||||||||| |||||  | ||||    
T  21467494 atttcaaattccttcacttttggtctttggtagaacttcacaatggaaaaatgcatatgtgttttgctaagttgacaaaatacatgcttatttaaaattt 21467395  T
Q  215 taaatt 220  Q
    ||||||    
T  21467394 taaatt 21467389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 34159873 - 34159938
Alignment:
Q  155 caatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaatt 220  Q
    |||||||||| || ||| |||||||| || |||  |||||||||||||||||||| |||| |||||    
T  34159873 caatgaaaaattgcaaaagtgttatgctgagttcacaaaatacatgtttattagagatttaaaatt 34159938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 39047974 - 39048039
Alignment:
Q  154 acaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaat 219  Q
    |||||||||| ||| | |||||||||| ||  ||| |||| |||||| ||||||||||||||||||    
T  39047974 acaatgaaaatatgcagatgtgttatgttgaattgacaaagtacatgcttattagatattttaaat 39048039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 19102524 - 19102420
Alignment:
Q  116 tttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatatttt 215  Q
    ||||||||||||||||||||| | ||| || |||  | |||||| ||||||| | ||||||| || |  |||| ||||||||||| |||||  | |||||    
T  19102524 tttcaaattccttcacttttggtctttggtagaacttcacaatgtaaaaatgcatatgtgttttgctaagttgacaaaatacatgcttatttaaaatttt 19102425  T
Q  216 aaatt 220  Q
    |||||    
T  19102424 aaatt 19102420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 16221368 - 16221261
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattt 214  Q
    ||||| |||||||||||||| | | ||| |||  || | |||||| |||||| || |||||||||| || |||  |||||||||||||||||||| ||||    
T  16221368 atttctaattccttcactttaggtttttggtgagatataacaatggaaaaatatagatgtgttatgctgagtttacaaaatacatgtttattagacattt 16221269  T
Q  215 taaattga 222  Q
    ||||||||    
T  16221268 taaattga 16221261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 361329 - 361434
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattt 214  Q
    |||||||||||||||||||||| | ||| || |||  | |||||||||||||| | ||||||| || |  |||| ||||||||||| |||||  | ||||    
T  361329 atttcaaattccttcacttttggtctttggtagaacttcacaatgaaaaaatgcatatgtgttttgctaagttgacaaaatacatgcttatttaaaattt 361428  T
Q  215 taaatt 220  Q
    ||||||    
T  361429 taaatt 361434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 23685875 - 23685924
Alignment:
Q  169 aaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaa 218  Q
    ||||| ||||||||| |||  |||||||||||||||||||||||||||||    
T  23685875 aaatgagttatgatgagtttacaaaatacatgtttattagatattttaaa 23685924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 23684360 - 23684466
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattt 214  Q
    |||||||||||||||||||||||| ||| || |||  | |||||| ||||||| | || |||| || |  |||| ||||||||||| |||||  | ||||    
T  23684360 atttcaaattccttcacttttgatctttggtagaacttcacaatggaaaaatgcatatatgttttgctaagttgacaaaatacatgcttatttaaaattt 23684459  T
Q  215 taaattg 221  Q
    |||||||    
T  23684460 taaattg 23684466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 14714868 - 14714941
Alignment:
Q  149 atcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaattga 222  Q
    |||| |||||| |||||| || ||||||| || || ||||  |||||||||| |||||||| ||||||||||||    
T  14714868 atctgacaatggaaaaatatagatgtgttttggtgagttgataaaatacatgcttattagacattttaaattga 14714941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 220
Target Start/End: Complemental strand, 35226429 - 35226324
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattt 214  Q
    |||||| ||||||||||||||||| ||| |||| || | ||||| ||||| || | | |||||||| |  |||| |||||||||| ||| ||| ||||||    
T  35226429 atttcagattccttcacttttgatctttggtggcatgtgacaattaaaaattgcagaagtgttatgttaagttgacaaaatacatatttgttacatattt 35226330  T
Q  215 taaatt 220  Q
     |||||    
T  35226329 aaaatt 35226324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 37250877 - 37250828
Alignment:
Q  171 atgtgttatgatgtgttggcaaaatacatgtttattagatattttaaatt 220  Q
    |||||||||| || |||  ||||||||||||||||||||||||| |||||    
T  37250877 atgtgttatgttgagttcacaaaatacatgtttattagatatttaaaatt 37250828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 45247143 - 45247192
Alignment:
Q  169 aaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaa 218  Q
    ||||| |||||||||  ||  |||||||||||||||||||||||||||||    
T  45247143 aaatgagttatgatgactttacaaaatacatgtttattagatattttaaa 45247192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 30255005 - 30255065
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtg 175  Q
    |||||||||||||||||||||| ||||| ||||   |  |||||||||||||||| |||||    
T  30255005 atttcaaattccttcacttttggtatttggtggggcccaacaatgaaaaaatgtagatgtg 30255065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 35225312 - 35225236
Alignment:
Q  123 ttccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacat 199  Q
    |||||||||||||||| ||| ||||||||| |||| |||||||| ||  || |||||| || |||| ||||| ||||    
T  35225312 ttccttcacttttgatttttagtggaatctgacaacgaaaaaatataggtgggttatgctgagttgacaaaacacat 35225236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 19906308 - 19906201
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattt 214  Q
    |||||||||| ||||||||||||||||| |||| |||| | |||  ||| || |||||||||| || || |||| ||||||| |||||| || || ||||    
T  19906308 atttcaaatttcttcacttttgatattttgtgggatctaataatagaaacatataaatgtgttctgttgagttgacaaaatatatgtttttttgacattt 19906209  T
Q  215 taaattga 222  Q
    ||||||||    
T  19906208 taaattga 19906201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 24541335 - 24541442
Alignment:
Q  113 tcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatat 212  Q
    |||||||| ||||||||| |||| || ||| |||| ||||  ||||| |||||||||  ||||||||| || |||  |||||||| ||||||||||| ||    
T  24541335 tcatttcagattccttcatttttcatttttggtgggatctaccaatggaaaaatgta--tgtgttatgttgagtttacaaaatacttgtttattagacat 24541432  T
Q  213 tttaaattga 222  Q
    || |||||||    
T  24541433 ttaaaattga 24541442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 5682596 - 5682554
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaa 157  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||    
T  5682596 attttaaattccttcacttttgatatttggtggaatctaacaa 5682554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 220
Target Start/End: Complemental strand, 23570390 - 23570285
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattt 214  Q
    |||||||||||||||| ||||| | ||| || ||| || |||||| ||||||| | ||||||| || |  |||| ||||||||||| |||||  | ||||    
T  23570390 atttcaaattccttcaattttggtctttggtagaacctcacaatggaaaaatgcatatgtgttttgctaagttgacaaaatacatgcttatttaaaattt 23570291  T
Q  215 taaatt 220  Q
    ||||||    
T  23570290 taaatt 23570285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 2260605 - 2260537
Alignment:
Q  154 acaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaattga 222  Q
    |||||| |||||| || ||||||| || || ||||  |||||||||| |||||||| ||||||||||||    
T  2260605 acaatggaaaaatatagatgtgttctggtgagttgataaaatacatgcttattagacattttaaattga 2260537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 6555628 - 6555727
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattt 214  Q
    |||| ||||| ||||||||||| | ||| |||  |||| | |||| ||||||||| |||||| |||||| |||||||||||||||| |||||||| ||||    
T  6555628 attttaaattacttcacttttggtctttggtgtgatctgaaaatggaaaaatgtagatgtgtaatgatgagttggcaaaatacatgcttattagacattt 6555727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 222
Target Start/End: Complemental strand, 13240520 - 13240407
Alignment:
Q  99 attcaacctctatatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaataca 198  Q
    ||||||||||| |||||||| ||||||  || |||||| ||||| |||| ||||||||||| |||||| ||          |||| |||| |||||||||    
T  13240520 attcaacctctctatcattttaaattcaatcgcttttggtattttgtgggatcttacaatggaaaaatata----------gatgcgttgacaaaataca 13240431  T
Q  199 tgtttattagatattttaaattga 222  Q
    || |||||||||||||||||||||    
T  13240430 tgcttattagatattttaaattga 13240407  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 315445 - 315544
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattt 214  Q
    |||| ||||| |||||| |||| | ||| |||  |||| | |||||||||||||| |||||| ||| || |||||||||||||||| |||||||| ||||    
T  315445 attttaaattacttcacctttggtctttggtgtcatctgaaaatgaaaaaatgtagatgtgtaatgttgagttggcaaaatacatgcttattagacattt 315544  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 13917832 - 13917888
Alignment:
Q  162 aaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaa 218  Q
    |||||||| |||||||||||||  ||  |||||||||||||||||||| ||||||||    
T  13917832 aaaatgtacatgtgttatgatgaattaacaaaatacatgtttattagacattttaaa 13917888  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 11559814 - 11559876
Alignment:
Q  160 aaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaattga 222  Q
    |||||||||||||||||| || || |||| ||||||||||  | |||||| ||||||||||||    
T  11559814 aaaaaatgtaaatgtgttttgttgagttgacaaaatacataataattagacattttaaattga 11559876  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 22192944 - 22192985
Alignment:
Q  107 tctatatcatttcaaattccttcacttttgatatttcgtgga 148  Q
    ||||||| |||||||||||||||||||||||| ||| |||||    
T  22192944 tctatattatttcaaattccttcacttttgatttttggtgga 22192985  T

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Target: scaffold0169 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 4846 - 4907
Alignment:
Q  161 aaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaattga 222  Q
    |||||| || |||| ||||| || |||| |||||||||||||||||||||||||||||||||    
T  4846 aaaaatatagatgttttatgctgagttgacaaaatacatgtttattagatattttaaattga 4907  T

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Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 49982 - 49875
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattt 214  Q
    |||| ||||||||||||||||| | ||| ||   || | |||||||||||||||| ||||||| || |  ||| |||||||||||| ||||||  |||||    
T  49982 attttaaattccttcacttttggtcttttgtccgatttgacaatgaaaaaatgtagatgtgttctgctacgtttgcaaaatacatgcttattaattattt 49883  T
Q  215 taaattga 222  Q
    ||||||||    
T  49882 taaattga 49875  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 18347998 - 18348089
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttatt 206  Q
    |||| ||||| ||||||||||| ||||| |||| |  |||||||||||||  ||| |||||||| |||| |||| |||| ||||||||||||    
T  18347998 atttaaaattacttcacttttggtatttggtgggagtttacaatgaaaaatagtacatgtgttaagatgagttgacaaagtacatgtttatt 18348089  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 6676399 - 6676290
Alignment:
Q  108 ctatatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttatta 207  Q
    |||||| |||||||| | ||||||| ||||||| | |||| |||| ||||||  ||||| ||  ||||||||| ||  ||  ||||||||||||||||||    
T  6676399 ctatattatttcaaacttcttcactattgatatgtagtgggatctgacaatggcaaaatatagttgtgttatgttgaatttacaaaatacatgtttatta 6676300  T
Q  208 gatattttaa 217  Q
    || |||||||    
T  6676299 gacattttaa 6676290  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 18290973 - 18290916
Alignment:
Q  161 aaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaa 218  Q
    ||||||||| |||||||||||||  ||  |||||||||||||||||||| ||||||||    
T  18290973 aaaaatgtacatgtgttatgatgaatttacaaaatacatgtttattagacattttaaa 18290916  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 24708764 - 24708863
Alignment:
Q  123 ttccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaattga 222  Q
    |||||||||||||||||||| |||  |||| ||| |  ||| || || |||||||||| ||  |||  |||||||||| |||||||| ||||||||||||    
T  24708764 ttccttcacttttgatatttggtgtgatctgacagtagaaacatatagatgtgttatgttgaattgataaaatacatgcttattagacattttaaattga 24708863  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 26247123 - 26247074
Alignment:
Q  171 atgtgttatgatgtgttggcaaaatacatgtttattagatattttaaatt 220  Q
    |||||||||| || |||| |||||||||||||||||||| |||| |||||    
T  26247123 atgtgttatgctgagttgacaaaatacatgtttattagacatttaaaatt 26247074  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 43989994 - 43990087
Alignment:
Q  111 tatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgttta 204  Q
    |||||||| ||||||||||| ||||| |||||  ||| ||||| ||||  ||||||||| |||| || ||||| |||  |||||||||| ||||    
T  43989994 tatcatttaaaattccttcatttttgttattttatgggatcttgcaatagaaaaatgtagatgtattttgatgagttaacaaaatacatattta 43990087  T

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Target: scaffold0211 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 16160 - 16061
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattt 214  Q
    |||| ||||| ||||||||||| | ||| |||  |||| | |||| ||||||||| || ||| ||| || |||||||||||||||| |||||||| ||||    
T  16160 attttaaattacttcacttttggtctttggtgtgatctgaaaatggaaaaatgtagatctgtaatgctgagttggcaaaatacatgcttattagacattt 16061  T

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Target: scaffold0284 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 594 - 532
Alignment:
Q  115 atttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgtaaatgtgtt 177  Q
    |||||||||||||||||||| | | ||| || |||||| |||||||||||||| | |||||||    
T  594 atttcaaattccttcactttgggtcttttgtagaatctaacaatgaaaaaatgcatatgtgtt 532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 8086 - 8030
Alignment:
Q  162 aaaatgtaaatgtgttatgatgtgttggcaaaatacatgtttattagatattttaaa 218  Q
    |||||| | ||||| ||||||| |||  |||||||||||||||||||| ||||||||    
T  8086 aaaatgcacatgtgctatgatgagtttacaaaatacatgtttattagaaattttaaa 8030  T

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Target: scaffold0051 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 17942 - 18000
Alignment:
Q  161 aaaaatgtaaatgtgttatgatgtgttgg-caaaatacatgtttattagatattttaaa 218  Q
    ||||||||| ||||| |||| || ||| | |||||||||||||||||||||||||||||    
T  17942 aaaaatgtatatgtgctatgttgagtttgacaaaatacatgtttattagatattttaaa 18000  T

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Target: scaffold1750 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 58 - 1
Alignment:
Q  111 tatcatttcaaattccttcacttttgatatttcgtggaatcttacaatgaaaaaatgt 168  Q
    |||||||| ||||||||||||||||| |||||| ||| ||||| ||||  ||||||||    
T  58 tatcatttaaaattccttcacttttgttatttcatgggatcttgcaatagaaaaatgt 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 13726 - 13685
Alignment:
Q  174 tgttatgatgtgttggcaaaatacatgtttattagatatttt 215  Q
    ||||||| || |||| ||||||||||||||||||||||||||    
T  13726 tgttatgttgggttgacaaaatacatgtttattagatatttt 13685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 32932 - 32900
Alignment:
Q  190 caaaatacatgtttattagatattttaaattga 222  Q
    |||||||||||||||||||| ||||||||||||    
T  32932 caaaatacatgtttattagacattttaaattga 32900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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