View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_194 (Length: 285)
Name: NF10855A_low_194
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_194 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 37324564 - 37324831
Alignment:
| Q |
1 |
tcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatatagaggtgtaaattccttgagccttacccacaagtttcgagtcacgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37324564 |
tcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatatagaagtgtaaattccttgagccttacccacaagtttcgagtcacgtt |
37324663 |
T |
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| Q |
101 |
cgggcccagccgtcaatggatcgtccatggccacaaccgtcccgaatggcaacgcattttttaccttgccattaggctcagctacaaataccatgcttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37324664 |
cgggcccagccgtcaatggatcgtccatggccacaaccgtcccgaatggcaacgcattttttaccttgccattaggctcagctataaataccatgcttgg |
37324763 |
T |
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| Q |
201 |
ttttggtcctgacacgatgtcgtgaaagcaaaaatgaaggtgagtgaatttctcttcttgaaaaccca |
268 |
Q |
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||||||||| ||||| ||||| |||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
37324764 |
ttttggtcccgacacaatgtcatgaaagtaaaagtgaaggtgagtgaatttctcttcttgaaaaccca |
37324831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 37317004 - 37317272
Alignment:
| Q |
1 |
tcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatatagaggtgtaaattccttgagccttacccacaagtttcgagtcacgtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37317004 |
tcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatattgaagtgtaaattccttgagccttacccacaagtttcgagtcacgtt |
37317103 |
T |
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| Q |
101 |
cgggcccagccgtcaatggatcgtccatggccacaaccgtcccgaatggcaacgcattttttaccttgccattaggctcagctacaaataccatgcttgg |
200 |
Q |
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| T |
37317104 |
caggaccagcagtcaatgggtcatccatggccacaacggtcccgaatggcaacgcattttttaccttgccattgggctcagctacaaataccatgctagg |
37317203 |
T |
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| Q |
201 |
ttttggtcctgacacgatgtcgtgaaagcaaaaatgaaggtgagtgaatttctcttcttgaaaacccaa |
269 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
37317204 |
ttttggtcctgacacgatgtcgtgaaagtaaaagtgaaggtgagtgaatttctcttcttgaaaacccaa |
37317272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 37320583 - 37320850
Alignment:
| Q |
1 |
tcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatatagaggtgtaaattccttgagccttacccacaagtttcgagtcacgtt |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
37320583 |
tcagtgaatgtcatggtcatcaccatcattagtcccatctcctcttgtgatatagaggtgtaaattccttgagccttacccacaagttttgattcacgtt |
37320682 |
T |
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| Q |
101 |
cgggcccagccgtcaatggatcgtccatggccacaaccgtcccgaatggcaacgcattttttaccttgccattaggctcagctacaaataccatgcttgg |
200 |
Q |
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|||| ||||||||||| || || ||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
37320683 |
cgggtccagccgtcaaggggtcatccatcgccacaactgtcccgaatggcaaggcattttttaccttgccattgggctcagctacaaataccatgctagg |
37320782 |
T |
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| Q |
201 |
ttttggtcctgacacgatgtcgtgaaagcaaaaatgaaggtgagtgaatttctcttcttgaaaaccca |
268 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37320783 |
ttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaaaccca |
37320850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 37306674 - 37306927
Alignment:
| Q |
16 |
gtcatcaccatcattagtcccatctcctcttgtgatatagaggtgtaaattccttgagccttacccacaagtttcgagtcacgttcgggcccagccgtca |
115 |
Q |
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||||| |||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||| |||||||||||| |||| |||||| ||||| |
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| T |
37306674 |
gtcataaccatcattagtcccatctcatcttgtgatattacagcgtaaattccttgagctttacccacgagtttcgagtcaagttcaggcccaatcgtca |
37306773 |
T |
|
| Q |
116 |
atggatcgtccatggccacaaccgtcccgaatggcaacgcattttttaccttgccattaggctcagctacaaataccatgcttggttttggtcctgacac |
215 |
Q |
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| ||||| ||||||||||| || ||||||||||| | | |||| ||||||| || ||||| ||||| | || |||||| ||| || ||| || |
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| T |
37306774 |
acggatcatccatggccaccactgtcccgaatggaagagagttttcagccttgccgttgggctcggctactatcactgtgcttgctttggggccttccat |
37306873 |
T |
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| Q |
216 |
gatgtcgtgaaagcaaaaatgaaggtgagtgaatttctcttcttgaaaacccaa |
269 |
Q |
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| T |
37306874 |
aacgtcgtggaaatagaagtgaaggtgggtgaatttctcttcttgaaaacccaa |
37306927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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