View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_198 (Length: 283)

Name: NF10855A_low_198
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_198
NF10855A_low_198
[»] chr3 (26 HSPs)
chr3 (1-278)||(41985572-41985852)
chr3 (13-276)||(41980810-41981073)
chr3 (28-159)||(9494822-9494953)
chr3 (15-173)||(9407324-9407482)
chr3 (15-170)||(9425531-9425686)
chr3 (35-173)||(9343823-9343961)
chr3 (57-278)||(9448314-9448535)
chr3 (30-173)||(9329809-9329952)
chr3 (30-173)||(9695616-9695759)
chr3 (28-173)||(9617463-9617608)
chr3 (30-173)||(9336513-9336656)
chr3 (38-170)||(9655360-9655492)
chr3 (15-173)||(9397743-9397903)
chr3 (38-170)||(9646367-9646499)
chr3 (28-159)||(9352872-9353003)
chr3 (65-158)||(9340679-9340772)
chr3 (58-179)||(9756381-9756502)
chr3 (28-120)||(9377057-9377149)
chr3 (73-173)||(9416589-9416689)
chr3 (13-173)||(9432852-9433012)
chr3 (28-117)||(9614009-9614098)
chr3 (28-165)||(9626488-9626625)
chr3 (39-139)||(9441815-9441915)
chr3 (125-173)||(9686751-9686799)
chr3 (28-158)||(9347958-9348088)
chr3 (28-158)||(9369612-9369742)
[»] chr8 (3 HSPs)
chr8 (29-278)||(44688680-44688929)
chr8 (113-278)||(13170579-13170744)
chr8 (13-53)||(13170758-13170798)
[»] chr1 (8 HSPs)
chr1 (28-278)||(18991175-18991422)
chr1 (17-168)||(4428591-4428742)
chr1 (17-124)||(4439820-4439927)
chr1 (39-155)||(235195-235311)
chr1 (35-150)||(8814385-8814500)
chr1 (31-148)||(246841-246958)
chr1 (94-155)||(251412-251473)
chr1 (94-150)||(231618-231674)
[»] chr2 (1 HSPs)
chr2 (28-170)||(20694304-20694446)
[»] chr6 (7 HSPs)
chr6 (28-173)||(7041467-7041612)
chr6 (35-155)||(7046817-7046937)
chr6 (28-155)||(7025721-7025854)
chr6 (94-155)||(7029850-7029911)
chr6 (28-155)||(7012785-7012918)
chr6 (94-155)||(9170854-9170915)
chr6 (94-153)||(9159515-9159574)
[»] chr7 (2 HSPs)
chr7 (28-160)||(3695661-3695792)
chr7 (98-173)||(450111-450186)
[»] chr5 (2 HSPs)
chr5 (106-159)||(18571160-18571213)
chr5 (28-155)||(33541623-33541750)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 41985572 - 41985852
Alignment:
Q  1 gtcaaaatcgtcgaatgcatcatcaccaaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaag 100  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  41985572 gtcaaaatcgtagaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaag 41985671  T
Q  101 aacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41985672 aacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccggggaaac 41985771  T
Q  201 caaaacaatgagagtcatatatgtctactagcaacaac---tcacgctcactctctaccaggaatttcatgtcccctccat 278  Q
    ||||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||    
T  41985772 caaaacaatgagagtcatatatgtctactagcaacaactgatcaccctcactctctaccaggaatttcatgtcccctccat 41985852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 41980810 - 41981073
Alignment:
Q  13 gaatgcatcatcaccaaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactcta 112  Q
    |||||||||| || ||||||| | ||||||||||||||||||||||||||  ||||||| |||| | |||||||||||||||||||||||||||||||||    
T  41980810 gaatgcatcaccaacaaagataatacaatttcctttgacaacagacaaatttgaagcagaagcaaaaaacgaacatccattccccaagaacaaaactcta 41980909  T
Q  113 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 212  Q
    ||||||||||||| ||||||||||||||||||||| |||| | |||| || ||||||||||| || |||||||||||||||||||| |||| ||||||||    
T  41980910 tcccctaaactcgtcaacttgacccatttcttctctttcttagcaagcctaaacacatcaagattgaaaccatcttcaccagggaacccaacacaatgag 41981009  T
Q  213 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctcc 276  Q
    ||| ||| ||||| |||||||| || |||| |||||||||||||||||||||||  ||||||||    
T  41981010 agtgataaatgtccactagcaataattcaccctcactctctaccaggaatttcacatcccctcc 41981073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 9494953 - 9494822
Alignment:
Q  28 aaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 127  Q
    ||||||||||||||| ||||||  |||  ||||||| ||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||  |    
T  9494953 aaagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatcccctaaactcatc 9494854  T
Q  128 aacttgacccatttcttctccttctcatcaag 159  Q
    || || |||||| || ||||||||||||||||    
T  9494853 aaattcacccatctcatctccttctcatcaag 9494822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 9407324 - 9407482
Alignment:
Q  15 atgcatcatcaccaaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatc 114  Q
    |||||||||||  ||||| ||||||||| |||||| ||||| ||||||||||||| | |||||| || |||||||||||| | ||||||||||| |||||    
T  9407324 atgcatcatcaataaagaagacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatc 9407423  T
Q  115 ccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 173  Q
    ||||||||||  |||||| |||||| | || | |||||| |||||||| ||||||||||    
T  9407424 ccctaaactcatcaacttcacccatcttttattcttctcgtcaagtctaaacacatcaa 9407482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 9425531 - 9425686
Alignment:
Q  15 atgcatcatcaccaaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatc 114  Q
    ||||||||||   ||||||||||||||| |||||| ||||| ||||||||||||| | |||||| || |||||||||||| | ||||||||||| ||||     
T  9425531 atgcatcatcgataaagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatt 9425630  T
Q  115 ccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 170  Q
    || |||||||  |||||| |||||||| || | |||||| |||||||| |||||||    
T  9425631 ccttaaactcatcaacttcacccattttttattcttctcgtcaagtctaaacacat 9425686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 173
Target Start/End: Original strand, 9343823 - 9343961
Alignment:
Q  35 acacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttga 134  Q
    |||||||||||| |   |||| ||||||||||||||| |||||| ||||||||| ||||||||||||||||||| |||||||||||| | |  ||||| |    
T  9343823 acacaatttcctctaggaacacacaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttca 9343922  T
Q  135 cccatttcttctccttctcatcaagtctgaacacatcaa 173  Q
    |||| ||||||||| ||||||||||  | ||||||||||    
T  9343923 cccacttcttctccatctcatcaagcttaaacacatcaa 9343961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 57 - 278
Target Start/End: Original strand, 9448314 - 9448535
Alignment:
Q  57 acaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 156  Q
    ||||||||||||||| |||||| ||||||||  ||||||||||||||||||| |||||||||||| | |  ||||| ||||||||||||||||||||||     
T  9448314 acaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcata 9448413  T
Q  157 aagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctacc 256  Q
    |||  | |||||||||| | ||| | ||||   ||| |||||  | ||||||  | | ||||| ||||| ||||||||||| || | ||| || || ||     
T  9448414 aagcttaaacacatcaacccttatagcatcaggacccgggaactcgaaacaaaaacactcataaatgtccactagcaacaagtctccctctctatcaact 9448513  T
Q  257 aggaatttcatgtcccctccat 278  Q
    | |||||| |||||||||||||    
T  9448514 aagaattttatgtcccctccat 9448535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 173
Target Start/End: Original strand, 9329809 - 9329952
Alignment:
Q  30 agatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaa 129  Q
    ||||||||||||| || ||| ||| |  ||| || ||||||| |||||| |||||| ||||||||||||||||||||||  |||| |||||| |||||||    
T  9329809 agatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattcgccaa 9329908  T
Q  130 cttgacccatttcttctccttctcatcaagtctgaacacatcaa 173  Q
    |||||||||  | ||||| ||||||||||| || ||||||||||    
T  9329909 cttgacccaccttttctctttctcatcaagcctaaacacatcaa 9329952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 9695759 - 9695616
Alignment:
Q  30 agatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaa 129  Q
    ||||||||||||| || ||  ||||| |||| || |||||||  ||||||||||||||  | | |||||| |||||||| |||||||||||| | | |||    
T  9695759 agatgacacaattcccatttgcaacacacaactctgaagcagatgcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattggtcaa 9695660  T
Q  130 cttgacccatttcttctccttctcatcaagtctgaacacatcaa 173  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||    
T  9695659 cttgacccacttcttctccttctcatcaagcctgaatacatcaa 9695616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 173
Target Start/End: Complemental strand, 9617608 - 9617463
Alignment:
Q  28 aaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 127  Q
    ||||||||||||||| ||||||  |||| ||||||| ||||||| |||||| || |||||||||||| | | ||||||||| |||||||||||| |   |    
T  9617608 aaagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaacatccattcacaaggaacaaaaccctatcccctaaatttttc 9617509  T
Q  128 aacttgacccatttcttctccttctcatcaagtctgaacacatcaa 173  Q
    ||||| |||||||||||||| ||||||| ||  |||||||| ||||    
T  9617508 aacttcacccatttcttctctttctcatgaaacctgaacacttcaa 9617463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 173
Target Start/End: Original strand, 9336513 - 9336656
Alignment:
Q  30 agatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaa 129  Q
    ||||||||||||| || ||| ||| |  ||| || ||||||| |||||| |||||||||||||||||||||||||||||  |||| |||||| ||| ||     
T  9336513 agatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcag 9336612  T
Q  130 cttgacccatttcttctccttctcatcaagtctgaacacatcaa 173  Q
    |||||||||  | ||||| ||||||||||| || ||||||||||    
T  9336613 cttgacccaccttttctctttctcatcaagcctaaacacatcaa 9336656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 9655492 - 9655360
Alignment:
Q  38 caatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccc 137  Q
    ||||| ||||||  |||| ||||||||||||| |  ||||| ||||||||||| |  ||||| |||||||| |||||||||||| ||  |||||| ||||    
T  9655492 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9655393  T
Q  138 atttcttctccttctcatcaagtctgaacacat 170  Q
    |||||||||||||||||| || |||||| ||||    
T  9655392 atttcttctccttctcatgaaatctgaaaacat 9655360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 9397743 - 9397903
Alignment:
Q  15 atgcatcatcaccaaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatc 114  Q
    |||||||||||  ||||| ||||||||| |||||| ||||| |||||||| |||| | ||| || || |||||||||||| | |||||||| || |||||    
T  9397743 atgcatcatcaataaagacgacacaattccctttggcaacacacaaatccaaagctgaagcggaaaatgaacatccattcacaaagaacaagaccctatc 9397842  T
Q  115 ccctaaactcgccaacttgaccca--tttcttctccttctcatcaagtctgaacacatcaa 173  Q
    ||||||||||  |||||| || ||  ||| || | |||||| |||||||| ||||||||||    
T  9397843 ccctaaactcatcaacttcacgcattttttttatacttctcgtcaagtctaaacacatcaa 9397903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 9646499 - 9646367
Alignment:
Q  38 caatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccc 137  Q
    ||||| ||||||  |||| ||||||||||||| |  ||||| ||||||||||| |  || || |||||||| |||||||||||| ||  |||||| ||||    
T  9646499 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9646400  T
Q  138 atttcttctccttctcatcaagtctgaacacat 170  Q
    |||||||||||||||||| || |||||| ||||    
T  9646399 atttcttctccttctcatgaaatctgaaaacat 9646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 9352872 - 9353003
Alignment:
Q  28 aaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 127  Q
    ||||||||||||||||||||||  || | ||| |||| || ||| |||||| |||||||||||| ||||||  |||||||| ||| |||||||  |   |    
T  9352872 aaagatgacacaatttcctttgggaagacacagatcccaaccagaagcagaaaacgaacatccactccccacaaacaaaaccctaccccctaattttttc 9352971  T
Q  128 aacttgacccatttcttctccttctcatcaag 159  Q
    ||||| ||||| ||||||||| ||||||||||    
T  9352972 aacttcacccacttcttctccatctcatcaag 9353003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 158
Target Start/End: Original strand, 9340679 - 9340772
Alignment:
Q  65 gaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 158  Q
    ||||||| |||||| ||||||||||||  ||| | ||| ||||| |||||||| ||| ||  |||||| ||||| |||||||||||||||||||    
T  9340679 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaaccctatccccgaaattcctcaacttcacccacttcttctccttctcatcaa 9340772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 9756381 - 9756502
Alignment:
Q  58 caaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatca 157  Q
    ||||||||| ||||  |||||||| ||||| || | ||| || |||||||| |||||||| ||| || |||||||||||||  | ||||| |||||||||    
T  9756381 caaatccgatgcagatgcagagaatgaacagccttccccgaaaaacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatca 9756480  T
Q  158 agtctgaacacatcaagcttta 179  Q
    || ||  ||||||||| |||||    
T  9756481 agcctatacacatcaatcttta 9756502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 9377057 - 9377149
Alignment:
Q  28 aaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaa 120  Q
    ||||||||||||||||||||||  || | ||| |||| |||||| |||||  |||||||||||| ||||||  |||||||  |||||||||||    
T  9377057 aaagatgacacaatttcctttgggaagacacagatcccaagcagaagcaggaaacgaacatccactccccacaaacaaaatcctatcccctaa 9377149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 173
Target Start/End: Original strand, 9416589 - 9416689
Alignment:
Q  73 agcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatca 172  Q
    |||||| || ||||||  |||| | |||||||| || |||||||||||||||| |||||| |||||||| || | |||||| ||||| | ||||||||||    
T  9416589 agcagaaaatgaacatttattcacgaagaacaacaccctatcccctaaactcgtcaacttcacccattttttattcttctcgtcaagacagaacacatca 9416688  T
Q  173 a 173  Q
    |    
T  9416689 a 9416689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 9432852 - 9433012
Alignment:
Q  13 gaatgcatcatcaccaaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactcta 112  Q
    |||| ||||||||  |||||||| |||||| |||| |  |||| |||||||||| || | |||||| || ||| || ||  ||| | ||||||||| |||    
T  9432852 gaatacatcatcaataaagatgatacaattcccttcggaaacacacaaatccgaggctgaagcagaaaaggaatattcaagccctatgaacaaaacccta 9432951  T
Q  113 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 173  Q
    || |||||| ||   | ||| ||||| ||| |||||||||||||||||||||| |||||||    
T  9432952 tctcctaaattcttgatcttcacccacttcctctccttctcatcaagtctgaaaacatcaa 9433012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 9614098 - 9614009
Alignment:
Q  28 aaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccc 117  Q
    |||||| |||||||||||||||  || | ||| ||| ||||||| |||||| || ||||||||| |||||||||| |||||  |||||||    
T  9614098 aaagataacacaatttcctttggtaagacacagatctgaagcagaagcagaaaatgaacatccactccccaagaaaaaaaccatatcccc 9614009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 9626625 - 9626488
Alignment:
Q  28 aaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 127  Q
    ||||||||  ||||| ||||||  |||| ||||||||||||| |  ||||| || ||   ||| || || || |||||||| |||||||||||| ||  |    
T  9626625 aaagatgatgcaattccctttggaaacacacaaatccgaagctgatgcagaaaatgatgttcctttgccaaaaaacaaaaccctatcccctaaattcatc 9626526  T
Q  128 aacttgacccatttcttctccttctcatcaagtctgaa 165  Q
    || || |||||||||||||||||||||| || ||||||    
T  9626525 aaattcacccatttcttctccttctcatgaaatctgaa 9626488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 9441915 - 9441815
Alignment:
Q  39 aatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca 138  Q
    |||| |||||||||||| ||| |||| | || | |||||| || ||||||  |||| | ||||||||||| |||||||||||||||  |||||| |||||    
T  9441915 aattccctttgacaacacacatatccaaggctgaagcagaaaatgaacatttattcacaaagaacaaaaccctatcccctaaactcatcaacttcaccca 9441816  T
Q  139 t 139  Q
    |    
T  9441815 t 9441815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
Q  125 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 173  Q
    |||||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  9686751 gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 9347958 - 9348088
Alignment:
Q  28 aaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 127  Q
    ||||| |||||||||||||||   || | | | ||| ||||||| |||||| ||||||||||||  ||| | ||| ||||  |||||||| |||  |  |    
T  9347958 aaagacgacacaatttcctttcggaatacatagatctgaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctc 9348057  T
Q  128 aacttgacccatttcttctccttctcatcaa 158  Q
    ||||| ||||| |||||||||||||||||||    
T  9348058 aacttcacccacttcttctccttctcatcaa 9348088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 9369612 - 9369742
Alignment:
Q  28 aaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 127  Q
    ||||| |||||||||||||||   || | | | ||| ||||||| |||||| ||||||||||||  ||| | ||| ||||  |||||||| |||  |  |    
T  9369612 aaagacgacacaatttcctttcggaatacatagatctgaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctc 9369711  T
Q  128 aacttgacccatttcttctccttctcatcaa 158  Q
    ||||| ||||| |||||||||||||||||||    
T  9369712 aacttcacccacttcttctccttctcatcaa 9369742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 29 - 278
Target Start/End: Complemental strand, 44688929 - 44688680
Alignment:
Q  29 aagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 128  Q
    ||||| |||||||| |||||| ||| |||||||||||||||||||| ||| || ||| || |||||||||||||||||| ||||| |||||||||||  |    
T  44688929 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgtta 44688830  T
Q  129 acttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctac 228  Q
    |||| ||||||||||| | ||||||||  ||  ||||||||||||||  || |||||||||||| ||||| ||||||| |||||||||||| ||||| ||    
T  44688829 actttacccatttcttatgcttctcattgagcgtgaacacatcaagccgtagaccatcttcacccgggaacccaaaaccatgagagtcatagatgtccac 44688730  T
Q  229 tagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 278  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  44688729 tagcaacaactcaccttcactctctaccaggaattttatgtcccctccat 44688680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 113 - 278
Target Start/End: Complemental strand, 13170744 - 13170579
Alignment:
Q  113 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 212  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  13170744 tcccctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgag 13170645  T
Q  213 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 278  Q
     |||||| ||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||    
T  13170644 ggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccat 13170579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 13170798 - 13170758
Alignment:
Q  13 gaatgcatcatcaccaaagatgacacaatttcctttgacaa 53  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  13170798 gaatgcatcatcactaaagatgacacaatttcctttgacaa 13170758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 278
Target Start/End: Original strand, 18991175 - 18991422
Alignment:
Q  28 aaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 127  Q
    ||||| ||||||||| |||||||||||||| ||||| ||||||| |||||| ||||||||||||||||||||||||||||| |||| |||||| |||  |    
T  18991175 aaagacgacacaattccctttgacaacagataaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctattccctaagctcttc 18991274  T
Q  128 aacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtcta 227  Q
     || |   ||||| |||||   |||||| ||| || ||||| |  || |||| ||| | ||| |||||||| ||||||||||| |||||| | ||||| |    
T  18991275 gacct---ccattccttctttctctcattaagcctaaacaccttcagttttagacctttttcgccagggaacccaaaacaatgcgagtcacagatgtcca 18991371  T
Q  228 ctagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 278  Q
    |||||||||||||||  |||| |||||||| ||||||||| ||||||||||    
T  18991372 ctagcaacaactcaccttcacactctaccaagaatttcatatcccctccat 18991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 4428591 - 4428742
Alignment:
Q  17 gcatcatcaccaaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatccc 116  Q
    |||||||||  ||||||||||||||| |||||   ||||||||| || |||||||  ||||| ||| |||||||||||||||| |||||||| |||||||    
T  4428591 gcatcatcaataaagatgacacaattccctttagtaacagacaactcagaagcagaggcagaaaacaaacatccattccccaaaaacaaaaccctatccc 4428690  T
Q  117 ctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 168  Q
    | ||||||| ||| || ||||||||   | ||||||||||||| || |||||    
T  4428691 ccaaactcgtcaatttcacccatttacgcgccttctcatcaagcctaaacac 4428742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 4439820 - 4439927
Alignment:
Q  17 gcatcatcaccaaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatccc 116  Q
    |||||||||  ||||||||||||||| |||||   |||| ||||||||||||||| |||||| |||||||||||||||||||| |||||||| ||||| |    
T  4439820 gcatcatcaataaagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatctc 4439919  T
Q  117 ctaaactc 124  Q
    | ||||||    
T  4439920 ccaaactc 4439927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 235195 - 235311
Alignment:
Q  39 aatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca 138  Q
    |||| ||||||  |||| ||||||||||||||| |||||| |||||||||     ||||||||| |||||||||||||||||| | |||||||| |||||    
T  235195 aattccctttgggaacacacaaatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcaccca 235294  T
Q  139 tttcttctccttctcat 155  Q
     ||||||||||| ||||    
T  235295 cttcttctccttttcat 235311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 8814500 - 8814385
Alignment:
Q  35 acacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttga 134  Q
    |||||||| ||||||  |||| |||||||| |||||| |||||| || |||||      |||||| ||||||||||||||||||||| |||||||||| |    
T  8814500 acacaattccctttgggaacacacaaatccaaagcagaagcagaaaatgaacacaaggaccccaaaaacaaaactctatcccctaaattcgccaacttca 8814401  T
Q  135 cccatttcttctcctt 150  Q
    |||| |||||||||||    
T  8814400 cccacttcttctcctt 8814385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 246841 - 246958
Alignment:
Q  31 gatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaac 130  Q
    |||||||||||| ||||||  |||| |||||||| |||||| |||||| || || ||      |||||||||||||||| |||| |||||| | ||||||    
T  246841 gatgacacaattccctttgtgaacacacaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaaaactgtatctcctaaattagccaac 246940  T
Q  131 ttgacccatttcttctcc 148  Q
    || |||||||||||||||    
T  246941 ttcacccatttcttctcc 246958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 251473 - 251412
Alignment:
Q  94 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 155  Q
    |||||||||||||||||||||||||| | |||||||||| ||||| ||||| ||||| ||||    
T  251473 ccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttttcat 251412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 231618 - 231674
Alignment:
Q  94 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 150  Q
    |||||||||||||||| ||||||||||| | |||||||| ||||| ||| |||||||    
T  231618 ccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctt 231674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 170
Target Start/End: Complemental strand, 20694446 - 20694304
Alignment:
Q  28 aaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 127  Q
    ||||||||||||||| |||||| ||||| ||||||||||||||| |||||| |||||||||||||||||||| |||||||| |||||||| ||||| | |    
T  20694446 aaagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatcccccaaacttgtc 20694347  T
Q  128 aacttgacccatttcttctccttctcatcaagtctgaacacat 170  Q
    ||  | ||||||||||||||||| |||||||| ||||||||||    
T  20694346 aaactcacccatttcttctccttttcatcaagcctgaacacat 20694304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 7041467 - 7041612
Alignment:
Q  28 aaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 127  Q
    ||||||||||||||| |||||| ||||  ||||||||||||||| | |||||||||||||| | |  |||||||||||||| |||||||||||||| | |    
T  7041467 aaagatgacacaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtc 7041566  T
Q  128 aacttgacccatttcttctccttctcatcaagtctgaacacatcaa 173  Q
    ||||| ||||| |||||||||||||||| |||| | |||| |||||    
T  7041567 aacttcacccacttcttctccttctcattaagtttaaacaaatcaa 7041612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 155
Target Start/End: Original strand, 7046817 - 7046937
Alignment:
Q  35 acacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttga 134  Q
    |||||||| |||||| ||||| ||||||| |||  || |||||| |||||||||    ||||||||||||||||| |||||||||||||||  ||||| |    
T  7046817 acacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaaactcgttaacttca 7046916  T
Q  135 cccatttcttctccttctcat 155  Q
    |||| ||||||||||||||||    
T  7046917 cccacttcttctccttctcat 7046937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 7025721 - 7025854
Alignment:
Q  28 aaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacat------ccattccccaagaacaaaactctatcccctaaa 121  Q
    |||||||||| |||| |||||| ||||| ||||||| ||||||  |||||| |||||||||      ||   ||||||||||||||| ||||| ||||||    
T  7025721 aaagatgacagaattccctttggcaacacacaaatctgaagcacaagcagaaaacgaacataccaaccccaaccccaagaacaaaaccctatctcctaaa 7025820  T
Q  122 ctcgccaacttgacccatttcttctccttctcat 155  Q
    |||| |||||| ||||| ||||||||||||||||    
T  7025821 ctcgtcaacttcacccacttcttctccttctcat 7025854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 7029850 - 7029911
Alignment:
Q  94 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 155  Q
    ||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcat 7029911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 7012785 - 7012918
Alignment:
Q  28 aaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacat------ccattccccaagaacaaaactctatcccctaaa 121  Q
    |||||||||| |||| |||||| ||||| ||||||||||||||   ||||| |||||||||      ||   ||||||||||||||  ||||| ||||||    
T  7012785 aaagatgacagaattccctttggcaacacacaaatccgaagcacaggcagaaaacgaacataccaaccccaaccccaagaacaaaatcctatctcctaaa 7012884  T
Q  122 ctcgccaacttgacccatttcttctccttctcat 155  Q
    || | |||||| ||||| ||||||||||||||||    
T  7012885 cttgtcaacttcacccacttcttctccttctcat 7012918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 9170854 - 9170915
Alignment:
Q  94 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 155  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||||    
T  9170854 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcat 9170915  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 9159574 - 9159515
Alignment:
Q  94 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 153  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||    
T  9159574 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctc 9159515  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 160
Target Start/End: Original strand, 3695661 - 3695792
Alignment:
Q  28 aaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 127  Q
    |||||| |||||||| |||||| || ||||||||||||||||| ||||||| || ||||||    | || |||||||||||||||||||||||||||  |    
T  3695661 aaagatcacacaattccctttggcagcagacaaatccgaagcaatagcagaaaatgaacatatgataccgaagaacaaaactctatcccctaaactctac 3695760  T
Q  128 aacttgacccatttcttctccttctcatcaagt 160  Q
    |||||||  || ||||||| |||||||| ||||    
T  3695761 aacttga-tcacttcttcttcttctcattaagt 3695792  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 450186 - 450111
Alignment:
Q  98 aagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 173  Q
    |||||||||| | |||| |||||| ||  |||||||||||| || ||||||||||||||||| || ||||||||||    
T  450186 aagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 450111  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 18571160 - 18571213
Alignment:
Q  106 aactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaag 159  Q
    |||| ||||||||||||||| ||| || ||||| ||||||||||||||||||||    
T  18571160 aactgtatcccctaaactcgtcaatttcacccacttcttctccttctcatcaag 18571213  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 33541623 - 33541750
Alignment:
Q  28 aaagatgacacaatttcctttgacaacagacaaatccgaagcagtagcagagaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 127  Q
    ||||| ||||||||| |||||| |||| |||||||| |||||||  ||||| || |||||  ||  ||| |||||||||||  |||| |||||||||       
T  33541623 aaagaggacacaattacctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 33541722  T
Q  128 aacttgacccatttcttctccttctcat 155  Q
    ||||| ||||| | | ||||||||||||    
T  33541723 aacttcacccactccgtctccttctcat 33541750  T

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