View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_2 (Length: 747)
Name: NF10855A_low_2
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 20 - 463
Target Start/End: Original strand, 11325637 - 11326083
Alignment:
| Q |
20 |
attttcatccaaaatccacatcaaag-tacattatcatgtgaaaattgtgtagaagaaaacaagagtttacttgcataagactcactgaatgaatnnnnn |
118 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11325637 |
attttcatccaaaatccacatcaaaaatacattatcatgtgaaaattgtgtagaagaaaacaagagtttacttgcataagactcactgaatgaataaaaa |
11325736 |
T |
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| Q |
119 |
nn-ggacaaaacacttcctgtgtcatcggaaaaagactgagataaagcaaaaattccgattgagggttatttgaagaaactatcgtctcgaagccttctt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11325737 |
aaaggacaaaacacttcctgtgtcatcggaaaaagactgagataaagcaaaaattccgattgagggttatttgaagaaactatcgtcttgaagccttctt |
11325836 |
T |
|
| Q |
218 |
tcatcacctgcataatatttcttccaatctccactgaagacgagttaaaagaatcctagtgtcatcattaagggaccaaagaagagattcttaaacctag |
317 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11325837 |
tcatcacctgcataatattgcttccaatctccactgaagatgagttaaaagaatcctagtgtcatcattaaggaaccaaagaagagattcttaaacctag |
11325936 |
T |
|
| Q |
318 |
gaagaaaatggtcgatagaccaaagaataatcttatcgttcgttcttgcatatattccagttcaataacattacaatgtaaatcaaccaaagccaaaatc |
417 |
Q |
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| T |
11325937 |
gaagaaaatggtcgatagaccaaagaataatcttatcgttcgttcctgcatatattccagttcaataacattacaatgtaaatcaaccaaagccaaaatc |
11326036 |
T |
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| Q |
418 |
tgctacctcgtaattgggcaccgtc-aaattattaagacaataacca |
463 |
Q |
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| T |
11326037 |
tactacctcgtaatttggcaccgtcaaaattattaagacaataacca |
11326083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 20 - 463
Target Start/End: Original strand, 11483658 - 11484104
Alignment:
| Q |
20 |
attttcatccaaaatccacatcaaag-tacattatcatgtgaaaattgtgtagaagaaaacaagagtttacttgcataagactcactgaatgaatnnnnn |
118 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11483658 |
attttcatccaaaatccacatcaaaaatacattatcatgtgaaaattgtgtagaagaaaacaagagtttacttgcataagactcactgaatgaataaaaa |
11483757 |
T |
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| Q |
119 |
nn-ggacaaaacacttcctgtgtcatcggaaaaagactgagataaagcaaaaattccgattgagggttatttgaagaaactatcgtctcgaagccttctt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11483758 |
aaaggacaaaacacttcctgtgtcatcggaaaaagactgagataaagcaaaaattccgattgagggttatttgaagaaactatcgtcttgaagccttctt |
11483857 |
T |
|
| Q |
218 |
tcatcacctgcataatatttcttccaatctccactgaagacgagttaaaagaatcctagtgtcatcattaagggaccaaagaagagattcttaaacctag |
317 |
Q |
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| T |
11483858 |
tcatcacctgcataatattgcttccaatctccactgaagatgagttaaaagaatcctagtgtcatcattaaggaaccaaagaagagattcttaaacctag |
11483957 |
T |
|
| Q |
318 |
gaagaaaatggtcgatagaccaaagaataatcttatcgttcgttcttgcatatattccagttcaataacattacaatgtaaatcaaccaaagccaaaatc |
417 |
Q |
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| T |
11483958 |
gaagaaaatggtcgatagaccaaagaataatcttatcgttcgttcctgcatatattccagttcaataacattacaatgtaaatcaaccaaagccaaaatc |
11484057 |
T |
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| Q |
418 |
tgctacctcgtaattgggcaccgtc-aaattattaagacaataacca |
463 |
Q |
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| T |
11484058 |
tactacctcgtaatttggcaccgtcaaaattattaagacaataacca |
11484104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 519 - 699
Target Start/End: Original strand, 11326082 - 11326262
Alignment:
| Q |
519 |
cataaccagagagagccccacatcagtttatccttgcatttgcttgtaaataaaaatcattctatccattgttttgtttcaagaataaaccaataatttg |
618 |
Q |
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| T |
11326082 |
cataaccagagagagccccacatcagtttatccatgcatttgcttgtaaataaaaatcattctatccattgttttgtttcaagaataaaccaataatttg |
11326181 |
T |
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| Q |
619 |
gtcctaaattcctaatgtcaagtaaatcaatttattaatgattcttgttatggattgatcactgtattacatgtaaagaag |
699 |
Q |
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| T |
11326182 |
gtcctaaattcgtaatgtcaagtaaatcaatttattaatgattcttgttatggattgttcactgtattacatgtaaagaag |
11326262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 519 - 699
Target Start/End: Original strand, 11484103 - 11484283
Alignment:
| Q |
519 |
cataaccagagagagccccacatcagtttatccttgcatttgcttgtaaataaaaatcattctatccattgttttgtttcaagaataaaccaataatttg |
618 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11484103 |
cataaccagagagagccccacatcagtttatccatgcatttgcttgtaaataaaaatcattctatccattgttttgtttcaagaataaaccaataatttg |
11484202 |
T |
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| Q |
619 |
gtcctaaattcctaatgtcaagtaaatcaatttattaatgattcttgttatggattgatcactgtattacatgtaaagaag |
699 |
Q |
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| T |
11484203 |
gtcctaaattcgtaatgtcaagtaaatcaatttattaatgattcttgttatggattgttcactgtattacatgtaaagaag |
11484283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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