View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_200 (Length: 281)
Name: NF10855A_low_200
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_200 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 4083159 - 4082879
Alignment:
| Q |
1 |
atgaatattgtagcgtttgttgtgtttttgtccgtggttgtggcttctttggtgtttgatatcggtgttgtagggggcggcgtcaattttcttcttcgaa |
100 |
Q |
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| T |
4083159 |
atgaatattgtagcgtttgttgtgtttttgtccgtggttgtggcttctttggtgtttgatatcggtgttgtagggggcggcgtcaattttcttcttcgaa |
4083060 |
T |
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| Q |
101 |
atcgaacactacatagagttgtgattatggcaatgcttgttgctaatcctattagggagaatgaaaaatatagaaatggacctatcaatgaattattggc |
200 |
Q |
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| T |
4083059 |
atcgaacactacatagagttgtgattatggcaatgcttgttgctaatcctattagggagaatgaaaaatttagaaatggacctattaataaattgttggc |
4082960 |
T |
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| Q |
201 |
attgtcatagggcaatcttcttcccatgacaaaagatattatctctgtaagtgctctctattgctgacaatttgttctatg |
281 |
Q |
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| T |
4082959 |
attgtcatagggcaatcttcttcccatgacaaaagatattatcgatgtaagtgatttctattgctgacaatttgttctatg |
4082879 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 48203029 - 48203072
Alignment:
| Q |
92 |
ttcttcgaaatcgaacactacatagagttgtgattatggcaatg |
135 |
Q |
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| T |
48203029 |
ttcttcggaatcgaaaactacatatagttgtgattatggcaatg |
48203072 |
T |
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