View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_201 (Length: 281)

Name: NF10855A_low_201
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_201
NF10855A_low_201
[»] chr8 (5 HSPs)
chr8 (2-266)||(268967-269231)
chr8 (2-266)||(646690-646954)
chr8 (2-266)||(832425-832689)
chr8 (95-263)||(292181-292346)
chr8 (113-257)||(9507015-9507156)
[»] chr2 (6 HSPs)
chr2 (7-263)||(29561195-29561442)
chr2 (45-139)||(18600002-18600096)
chr2 (61-135)||(18605506-18605580)
chr2 (62-139)||(19388791-19388868)
chr2 (190-263)||(19388676-19388749)
chr2 (190-263)||(18599887-18599960)
[»] chr6 (2 HSPs)
chr6 (7-257)||(19823775-19824016)
chr6 (2-263)||(19888858-19889110)
[»] chr3 (3 HSPs)
chr3 (2-263)||(17777817-17778069)
chr3 (2-263)||(19079118-19079370)
chr3 (7-263)||(2294789-2295045)
[»] chr1 (3 HSPs)
chr1 (2-263)||(139001-139253)
chr1 (2-263)||(164401-164653)
chr1 (2-153)||(18215068-18215219)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 2 - 266
Target Start/End: Complemental strand, 269231 - 268967
Alignment:
Q  2 caaaagattttttctcatgtaatgatctgaatgtaagaagttttggtttcacactaattttgatttttggatcatgatggataagagttgccttgtaggt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  269231 caaaagattttttctcatgtaatgatctgaatgtaagaagttttggtttcacactaattttgatttttggatcatgatggataagagttgccttgtaggt 269132  T
Q  102 tgagttgaaaaagccaacattcgtaactgttctatgaatattgacattgaaacgattttgataagacctaacaggaatcaccattgatggatagttaata 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  269131 tgagttgaaaaagccaacattcgtaactgttctatgaatattgacattgaaacgcttgtgataagacctaacaggaatcaccattgatggatagttaata 269032  T
Q  202 tctttcaccaaggaccttttggatgttacgtggcaacttgaattatctccactaatctgtttgat 266  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  269031 tctttcaccaaggaccttttggatgttacgtggcaacttaaattatctccactaatctgtttgat 268967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 2 - 266
Target Start/End: Original strand, 646690 - 646954
Alignment:
Q  2 caaaagattttttctcatgtaatgatctgaatgtaagaagttttggtttcacactaattttgatttttggatcatgatggataagagttgccttgtaggt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  646690 caaaagattttttctcatgtaatgatctgaatgtaagaagttttggtttcacactaattttgatttttggatcatgatggataagagttgccttgtaggt 646789  T
Q  102 tgagttgaaaaagccaacattcgtaactgttctatgaatattgacattgaaacgattttgataagacctaacaggaatcaccattgatggatagttaata 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  646790 tgagttgaaaaagccaacattcgtaactgttctatgaatattgacattgaaacgcttgtgataagacctaacaggaatcaccattgatggatagttaata 646889  T
Q  202 tctttcaccaaggaccttttggatgttacgtggcaacttgaattatctccactaatctgtttgat 266  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  646890 tctttcaccaaggaccttttggatgttacgtggcaacttaaattatctccactaatctgtttgat 646954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 2 - 266
Target Start/End: Original strand, 832425 - 832689
Alignment:
Q  2 caaaagattttttctcatgtaatgatctgaatgtaagaagttttggtttcacactaattttgatttttggatcatgatggataagagttgccttgtaggt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  832425 caaaagattttttctcatgtaatgatctgaatgtaagaagttttggtttcacactaattttgatttttggatcatgatggataagagttgccttgtaggt 832524  T
Q  102 tgagttgaaaaagccaacattcgtaactgttctatgaatattgacattgaaacgattttgataagacctaacaggaatcaccattgatggatagttaata 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  832525 tgagttgaaaaagccaacattcgtaactgttctatgaatattgacattgaaacgcttgtgataagacctaacaggaatcaccattgatggatagttaata 832624  T
Q  202 tctttcaccaaggaccttttggatgttacgtggcaacttgaattatctccactaatctgtttgat 266  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  832625 tctttcaccaaggaccttttggatgttacgtggcaacttaaattatctccactaatctgtttgat 832689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 95 - 263
Target Start/End: Complemental strand, 292346 - 292181
Alignment:
Q  95 tgtaggttgagttgaaaaagccaacattcgtaactgttctatgaatattgacattgaaacgattttgataagacctaacaggaatcaccattgatggata 194  Q
    ||||| ||||||||  | |||||||||| ||||||||||||||||| ||||||||||||   |||| || ||||  |||||||||||||| || ||||||    
T  292346 tgtagcttgagttgggagagccaacatttgtaactgttctatgaatcttgacattgaaa---tttttatgagactcaacaggaatcaccagtgctggata 292250  T
Q  195 gttaatatctttcaccaaggaccttttggatgttacgtggcaacttgaattatctccactaatctgttt 263  Q
    ||| ||||||||||| ||||| || ||||| | | | ||||||||||| || |||||||||||||||||    
T  292249 gtttatatctttcacaaaggatctattggaagctccatggcaacttgagttttctccactaatctgttt 292181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 113 - 257
Target Start/End: Complemental strand, 9507156 - 9507015
Alignment:
Q  113 agccaacattcgtaactgttctatgaatattgacattgaaacgattttgataagacctaacaggaatcaccattgatggatagttaatatctttcaccaa 212  Q
    |||||||||| ||||||||||||||||| |||||||||||||   |||  | ||||  |||||||||||| | || ||||||||| ||||||||||| ||    
T  9507156 agccaacatttgtaactgttctatgaatcttgacattgaaac---ttttctgagactcaacaggaatcactagtgctggatagtttatatctttcacaaa 9507060  T
Q  213 ggaccttttggatgttacgtggcaacttgaattatctccactaat 257  Q
    ||| || ||||| | |   ||||||||||| || |||||||||||    
T  9507059 ggatctattggaagctctatggcaacttgagttttctccactaat 9507015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 29561442 - 29561195
Alignment:
Q  7 gattttttctcatgtaatgatctgaatgtaagaagttttggtttcacactaattttgatttttggatcatgatggataagagttgccttgtaggttgagt 106  Q
    ||||||||||||||||||||  ||||||  |||||||| |||| ||||||||| |||||||||| || ||||||||| ||||| ||||||||||||||||    
T  29561442 gattttttctcatgtaatgacttgaatgatagaagtttaggttccacactaatcttgatttttgaattatgatggatgagagtagccttgtaggttgagt 29561343  T
Q  107 tgaaaaagccaacattcgtaactgttctatgaatattgacattgaaacgattttgataagacctaacaggaatcaccattgatggatagttaatatcttt 206  Q
    ||  ||| |||||||| ||||||||||||||||| |||||||||||| | ||   |||       ||||||||||||||||  |||||||| ||||||||    
T  29561342 tgtgaaaaccaacatttgtaactgttctatgaatcttgacattgaaatgctt---ata------tacaggaatcaccattgcaggatagtttatatcttt 29561252  T
Q  207 caccaaggaccttttggatgttacgtggcaacttgaattatctccactaatctgttt 263  Q
    |||||| || ||||| || | |   |||||||| |||||||||||| |||| |||||    
T  29561251 caccaaagatcttttcgacgcttgatggcaactcgaattatctccagtaatttgttt 29561195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 18600096 - 18600002
Alignment:
Q  45 tggtttcacactaattttgatttttggatcatgatggataagagttgccttgtaggttgagttgaaaaagccaacattcgtaactgttctatgaa 139  Q
    ||||| |||||| || ||||||| ||||| | ||||||| ||||||||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  18600096 tggttccacacttatcttgatttctggattacgatggatgagagttgccttgtaggttgagttgggaaagccaacatttgtaactgttctatgaa 18600002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 18605580 - 18605506
Alignment:
Q  61 ttgatttttggatcatgatggataagagttgccttgtaggttgagttgaaaaagccaacattcgtaactgttcta 135  Q
    ||||||| ||||| | ||||||| ||||||||||||||||||||||||  |||||||||||| ||||||||||||    
T  18605580 ttgatttctggattacgatggatgagagttgccttgtaggttgagttgggaaagccaacatttgtaactgttcta 18605506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 19388868 - 19388791
Alignment:
Q  62 tgatttttggatcatgatggataagagttgccttgtaggttgagttgaaaaagccaacattcgtaactgttctatgaa 139  Q
    |||||| ||||| | |||| || ||||| ||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  19388868 tgatttctggattacgatgaatgagagtagccttgtaggttgagttgggaaagccaacatttgtaactgttctatgaa 19388791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 19388749 - 19388676
Alignment:
Q  190 ggatagttaatatctttcaccaaggaccttttggatgttacgtggcaacttgaattatctccactaatctgttt 263  Q
    ||||| || |||||||||||||| || ||||  || ||| | |||||||||||||||||||||||||| |||||    
T  19388749 ggataatttatatctttcaccaatgatctttcagaagttccatggcaacttgaattatctccactaatttgttt 19388676  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 18599960 - 18599887
Alignment:
Q  190 ggatagttaatatctttcaccaaggaccttttggatgttacgtggcaacttgaattatctccactaatctgttt 263  Q
    ||||| || |||||||||||||  || ||||  || ||| | |||||||||||||||||||||||||| |||||    
T  18599960 ggataatttatatctttcaccactgatctttcagaagttccatggcaacttgaattatctccactaatttgttt 18599887  T

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Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 257
Target Start/End: Complemental strand, 19824016 - 19823775
Alignment:
Q  7 gattttttctcatgtaatgatctgaatgtaagaagttttggtttcacactaattttgatttttggatcatgatggataagagttgccttgtaggttgagt 106  Q
    |||| |||||| | ||||||||||||||  |||| ||||||||  |||||||| |||| |||||||| ||||||||||||||| ||||||||||||||||    
T  19824016 gattgtttctcgtttaatgatctgaatgagagaatttttggttcaacactaatcttgacttttggattatgatggataagagtagccttgtaggttgagt 19823917  T
Q  107 tgaaaaagccaacattcgtaactgttctatgaatattgacattgaaacgattttgataagacctaacaggaatcaccattgatggatagttaatatcttt 206  Q
    ||  |||||||||||| || |||||||||||||| |||||||||||| |  | ||          ||| |||  |||||||  |||||||| ||||||||    
T  19823916 tgtgaaagccaacatttgtgactgttctatgaatcttgacattgaaatgcctatg---------tacaagaaataccattgcaggatagtttatatcttt 19823826  T
Q  207 caccaaggaccttttggatgttacgtggcaacttgaattatctccactaat 257  Q
    ||||||||| ||||||||||   | ||||||||||||| ||||||||||||    
T  19823825 caccaaggatcttttggatgcaccatggcaacttgaatcatctccactaat 19823775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 2 - 263
Target Start/End: Complemental strand, 19889110 - 19888858
Alignment:
Q  2 caaaagattttttctcatgtaatgatctgaatgtaagaagttttggtttcacactaattttgatttttggatcatgatggataagagttgccttgtaggt 101  Q
    |||| |||| |||||| | ||||||||||||||  |||| ||||||||  |||||||| |||| |||||||| ||||||||||||||| || ||||||||    
T  19889110 caaatgattgtttctcgtttaatgatctgaatgagagaatttttggttcgacactaatcttgacttttggattatgatggataagagtagctttgtaggt 19889011  T
Q  102 tgagttgaaaaagccaacattcgtaactgttctatgaatattgacattgaaacgattttgataagacctaacaggaatcaccattgatggatagttaata 201  Q
    |||||||  |||||||||||| || |||||||||||||| |||||||||||| |  | ||          ||| |||  |||||||  |||||||| |||    
T  19889010 tgagttgtgaaagccaacattagtgactgttctatgaatcttgacattgaaatgcctatg---------tacaagaaataccattgcaggatagtttata 19888920  T
Q  202 tctttcaccaaggaccttttggatgttacgtggcaacttgaattatctccactaatctgttt 263  Q
    |||||||||||||| ||||||||||   | ||||||||||||| |||||||||||| |||||    
T  19888919 tctttcaccaaggatcttttggatgcatcatggcaacttgaatcatctccactaatttgttt 19888858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 2 - 263
Target Start/End: Original strand, 17777817 - 17778069
Alignment:
Q  2 caaaagattttttctcatgtaatgatctgaatgtaagaagttttggtttcacactaattttgatttttggatcatgatggataagagttgccttgtaggt 101  Q
    |||| |||||||| |||||||||||  ||||||  ||||||||||||| ||||||||| |||||||||| ||  || ||||||||||| | |||||||||    
T  17777817 caaatgattttttttcatgtaatgacttgaatgatagaagttttggttccacactaatcttgatttttgaattgtggtggataagagtagtcttgtaggt 17777916  T
Q  102 tgagttgaaaaagccaacattcgtaactgttctatgaatattgacattgaaacgattttgataagacctaacaggaatcaccattgatggatagttaata 201  Q
    |||||||| ||| |||||||| ||||||||||||||||| ||||| |||||| | || ||          || ||||||||||||| ||||||||| |||    
T  17777917 tgagttgagaaaaccaacatttgtaactgttctatgaatcttgacgttgaaatgtttatg---------taccggaatcaccattgctggatagtttata 17778007  T
Q  202 tctttcaccaaggaccttttggatgttacgtggcaacttgaattatctccactaatctgttt 263  Q
    ||||||||||| || | ||| || | |   |||||||| ||||||||||||||||| |||||    
T  17778008 tctttcaccaaagatcattttgaagcttgatggcaactcgaattatctccactaatttgttt 17778069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 2 - 263
Target Start/End: Original strand, 19079118 - 19079370
Alignment:
Q  2 caaaagattttttctcatgtaatgatctgaatgtaagaagttttggtttcacactaattttgatttttggatcatgatggataagagttgccttgtaggt 101  Q
    |||| |||||||| |||||||||||  ||||||  ||||||||||||| ||||||||| |||||||||| ||  || ||||||||||| | |||||||||    
T  19079118 caaatgattttttttcatgtaatgacttgaatgatagaagttttggttccacactaatcttgatttttgaattgtggtggataagagtagtcttgtaggt 19079217  T
Q  102 tgagttgaaaaagccaacattcgtaactgttctatgaatattgacattgaaacgattttgataagacctaacaggaatcaccattgatggatagttaata 201  Q
    |||||||| ||| |||||||| ||||||||||||||||| ||||| |||||| | || ||          || ||||||||||||| ||||||||| |||    
T  19079218 tgagttgagaaaaccaacatttgtaactgttctatgaatcttgacgttgaaatgtttatg---------taccggaatcaccattgctggatagtttata 19079308  T
Q  202 tctttcaccaaggaccttttggatgttacgtggcaacttgaattatctccactaatctgttt 263  Q
    ||||||||||| || | ||| || | |   |||||||| ||||||||||||||||| |||||    
T  19079309 tctttcaccaaagatcattttgaagcttgatggcaactcgaattatctccactaatttgttt 19079370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 2295045 - 2294789
Alignment:
Q  7 gattttttctcatgtaatgatctgaatgtaagaagttttggtttcacactaattttgatttttggatcatgatggataagagttgccttgtaggttgagt 106  Q
    |||| |||||||| ||||||| ||||||  |||||||||||||||||| |||| ||||||||| ||| ||||| ||| ||| | ||||||||||||||||    
T  2295045 gattgtttctcatttaatgatgtgaatgagagaagttttggtttcacagtaatcttgatttttagattatgattgatgagaatagccttgtaggttgagt 2294946  T
Q  107 tgaaaaagccaacattcgtaactgttctatgaatattgacattgaaacgattttgataagacctaacaggaatcaccattgatggatagttaatatcttt 206  Q
    ||  |||||||||||| || |||||||||||||| ||| ||| ||| |  || ||||||| |  ||| |||||||||||||  || ||||| ||||||||    
T  2294945 tgggaaagccaacatttgtcactgttctatgaattttggcatggaagctcttatgataaggctcaaccggaatcaccattgcagggtagtttatatcttt 2294846  T
Q  207 caccaaggaccttttggatgttacgtggcaacttgaattatctccactaatctgttt 263  Q
     |||||||  ||| |||| | | | || |||||| |||| |||||||| || |||||    
T  2294845 gaccaaggctcttctggaagcttcatgacaacttaaattttctccacttatttgttt 2294789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 263
Target Start/End: Original strand, 139001 - 139253
Alignment:
Q  2 caaaagattttttctcatgtaatgatctgaatgtaagaagttttggtttcacactaattttgatttttggatcatgatggataagagttgccttgtaggt 101  Q
    |||| |||| |||||||| ||||||| |||| |  |||| |||||||| ||||||||| ||||||||||||||||||||| | ||||| || ||||||||    
T  139001 caaatgattgtttctcatataatgatttgaaagacagaaattttggttccacactaatcttgatttttggatcatgatggctgagagtagctttgtaggt 139100  T
Q  102 tgagttgaaaaagccaacattcgtaactgttctatgaatattgacattgaaacgattttgataagacctaacaggaatcaccattgatggatagttaata 201  Q
    ||||||   |||||||||||| || |||||||||||||  || ||||||||| | || ||          |||||||| |||||||  |||||||| |||    
T  139101 tgagttaggaaagccaacatttgtgactgttctatgaacctttacattgaaatgcttatg---------tacaggaataaccattgcaggatagtttata 139191  T
Q  202 tctttcaccaaggaccttt-tggatgttacgtggcaacttgaattatctccactaatctgttt 263  Q
    ||||||||||| || ||||  ||||  | | ||||||||||||||||||||||||||||||||    
T  139192 tctttcaccaatgatctttcaggat-atccatggcaacttgaattatctccactaatctgttt 139253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 263
Target Start/End: Original strand, 164401 - 164653
Alignment:
Q  2 caaaagattttttctcatgtaatgatctgaatgtaagaagttttggtttcacactaattttgatttttggatcatgatggataagagttgccttgtaggt 101  Q
    |||| |||| |||||||| ||||||| |||| |  |||| |||||||| ||||||||| |||||||| |||||||||||| | ||||| || ||||||||    
T  164401 caaatgattgtttctcatttaatgatttgaaagagagaaattttggttccacactaatcttgattttcggatcatgatggctgagagtagctttgtaggt 164500  T
Q  102 tgagttgaaaaagccaacattcgtaactgttctatgaatattgacattgaaacgattttgataagacctaacaggaatcaccattgatggatagttaata 201  Q
    ||||||   |||||||||||| || |||||||||||||  || ||||||||| | || ||           ||||||| |||||||  |||||||| |||    
T  164501 tgagttaggaaagccaacatttgtgactgttctatgaacctttacattgaaatgcttatg---------tgcaggaataaccattgcaggatagtttata 164591  T
Q  202 tctttcaccaaggaccttt-tggatgttacgtggcaacttgaattatctccactaatctgttt 263  Q
    ||||||||||| || ||||  |||| || | ||||||||||||||||||||||| ||||||||    
T  164592 tctttcaccaatgatctttcaggatctt-catggcaacttgaattatctccacttatctgttt 164653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 18215219 - 18215068
Alignment:
Q  2 caaaagattttttctcatgtaatgatctgaatgtaagaagttttggtttcacactaattttgatttttggatcatgatggataagagttgccttgtaggt 101  Q
    |||| |||| |||||||| ||||||| ||||||  |||  |||||||| ||| ||||| ||||||||||||| ||||||| | ||| | |||||||| ||    
T  18215219 caaaggattgtttctcatttaatgatttgaatgagagacattttggttccactctaatcttgatttttggattatgatggttgagaatagccttgtacgt 18215120  T
Q  102 tgagttgaaaaagccaacattcgtaactgttctatgaatattgacattgaaa 153  Q
    ||||||  |||  |||||||| || |||||||| |||||||  |||||||||    
T  18215119 tgagttagaaagtccaacatttgtgactgttctttgaatatgtacattgaaa 18215068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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