View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_202 (Length: 279)
Name: NF10855A_low_202
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_202 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 273
Target Start/End: Complemental strand, 41223018 - 41222765
Alignment:
| Q |
20 |
gtaagcttgaacctagtcaaatatgtttgaatgtaatttgatgccttcagaagcaccgatgtcacttgttatttgatttcatccaactttgcatgattca |
119 |
Q |
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| T |
41223018 |
gtaagcttgaacctagttaaatatgtttgaatgtaatttgatgccttcagaagcaccgatgtcacttgttatttgatttcatccaactttgcaggattca |
41222919 |
T |
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| Q |
120 |
acatggagaagacatgacatattggtgactatgttgttttactatgtagcttgtgttgcagcatatacgtagagatcgttctatttcactggttaaagga |
219 |
Q |
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| T |
41222918 |
acatggagaagacatgacatattggtgactatgttgtggtactatgtagcttatgttgtagcatatatgtagagatcattctatttcactggttacagta |
41222819 |
T |
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| Q |
220 |
gtatttgttgtgtcacactggttctaggaacaatactttattattgggttgcac |
273 |
Q |
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| T |
41222818 |
gtatgtgttgtgtcaaactggttctaggaacaatactttattattgggttgcac |
41222765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 16234002 - 16234263
Alignment:
| Q |
20 |
gtaagcttgaacctagtcaaatatgtttgaatgtaatttgatgccttcagaagcaccgatgtcacttgttatttgatttcatccaactttgcatgattca |
119 |
Q |
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| T |
16234002 |
gtaagcttgaacctagttaaatatgtttgaatgtaatttgatgccttcagaagcaccgatgtcacttgttattggatttcatccaactttgcaggattca |
16234101 |
T |
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| Q |
120 |
acatggagaagacatgacatattggtgac----tatgttgttttactatgtagcttgtgttgcagcata----tacgtagagatcgttctatttcactgg |
211 |
Q |
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| T |
16234102 |
acatggagaagacatgacatattggtgactatatatgttgttttactatggagcttatgttgtagcatatacgtacgtagagatcgttctatttcactgg |
16234201 |
T |
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| Q |
212 |
ttaaaggagtatttgttgtgtcacactggttctaggaacaatactttattattgggttgcac |
273 |
Q |
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| T |
16234202 |
ttaaaggagtatttgttgtgtcacactggttctaggaacaatactttattattgggttgcac |
16234263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 41217174 - 41217096
Alignment:
| Q |
72 |
gcaccgatgtcacttgttatttgatttcatccaactttgcatgattcaacatggagaagacatgacatattggtgacta |
150 |
Q |
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| T |
41217174 |
gcactgatatcaattgttacttgatttcatccaaccttgcaggattcacaatgaagaagacatgacatattggtgacta |
41217096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 41217055 - 41217009
Alignment:
| Q |
227 |
ttgtgtcacactggttctaggaacaatactttattattgggttgcac |
273 |
Q |
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| T |
41217055 |
ttgtgtcacactggttctaggaataatgttttatttttgggttgcac |
41217009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 53 - 273
Target Start/End: Original strand, 1598683 - 1598903
Alignment:
| Q |
53 |
taatttgatgccttcagaagcaccgatgtcacttgttatttgatttcatccaactttgcatgattcaacatggagaagacatgacatattggtgactatg |
152 |
Q |
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| T |
1598683 |
taatttgatgctttcagaaacactgatatcacttgttacttgatttcatccatctttgcaggatttaacatggagaagacatgacatattgttgactatg |
1598782 |
T |
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| Q |
153 |
ttgttttactatgtagcttgtgttgcagcatatacgtagagatcgttctatttcactggttaaaggagtatttgttgtgtcacactggttctaggaacaa |
252 |
Q |
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| T |
1598783 |
tcctgttactatgtaacttaggtcgtagcatatatgtaaagttcggtttatttcactagttatagtagtatattttgtgtcacgcttgttctagaaacaa |
1598882 |
T |
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| Q |
253 |
tactttattattgggttgcac |
273 |
Q |
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| T |
1598883 |
tacattgttttttggttgcac |
1598903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 1294761 - 1294713
Alignment:
| Q |
20 |
gtaagcttgaacctagtcaaatatgtttgaatgtaatttgatgccttca |
68 |
Q |
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| T |
1294761 |
gtaagcttgaaccaagttaaatatgtttgaatgtaatttgatgccttca |
1294713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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