View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_209 (Length: 276)
Name: NF10855A_low_209
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_209 |
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| [»] scaffold0147 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 21 - 276
Target Start/End: Original strand, 2239 - 2494
Alignment:
| Q |
21 |
atttctaccgtgattcatgtcctcatgctgagcacattgttcgttctacgcttcacctgctttacaaaactaatcctgctttggttcctgctcttattcg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2239 |
atttctaccgtgattcatgtcctcatgctgagcacattgttcgttctacgcttcacctgctttacaaaactaatcctgctttggttcctgctcttattcg |
2338 |
T |
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| Q |
121 |
tcttgtttttcatgattgcttcattcaggtccatttttctttgtttctatttataatgatgcactttcttgtgtattattatttcataacaatgaagnnn |
220 |
Q |
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| T |
2339 |
tcttgtttttcatgattgcttcattcaggtccatttttctttgtttctatttataatgatgcattttcttgtgtattattatttcataacaatgaagaaa |
2438 |
T |
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| Q |
221 |
nnnntagggttttattgtgtattttaataattgttattattatttggtcatctctg |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2439 |
aaaatagggttttattgtgtattttaataattgttattattatttggtcatttctg |
2494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 21 - 276
Target Start/End: Original strand, 3451458 - 3451713
Alignment:
| Q |
21 |
atttctaccgtgattcatgtcctcatgctgagcacattgttcgttctacgcttcacctgctttacaaaactaatcctgctttggttcctgctcttattcg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3451458 |
atttctaccgtgattcatgtcctcatgctgagcacattgttcgttctacgcttcacctgctttacaaaactaatcctgctttggttcctgctcttattcg |
3451557 |
T |
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| Q |
121 |
tcttgtttttcatgattgcttcattcaggtccatttttctttgtttctatttataatgatgcactttcttgtgtattattatttcataacaatgaagnnn |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3451558 |
tcttgtttttcatgattgcttcattcaggtccatttttctttgtttctatttataatgatgcattttcttgtgtattattatttcataacaatgaagaaa |
3451657 |
T |
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| Q |
221 |
nnnntagggttttattgtgtattttaataattgttattattatttggtcatctctg |
276 |
Q |
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| T |
3451658 |
aaaatagggttttattgtgtattttaataattgttattattatttggtcatttctg |
3451713 |
T |
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