View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_210 (Length: 276)
Name: NF10855A_low_210
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_210 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 24370424 - 24370687
Alignment:
| Q |
2 |
ccgcgggctggtacttatttgcaagagaaagtggactgaaatcaggagatgtttgtgtctttgagttgataaacaagaaagatttggtttttaaagttca |
101 |
Q |
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| T |
24370424 |
ccgcgggctggtacttatttgcaagagaaagtggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaaattca |
24370523 |
T |
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| Q |
102 |
tgttttctaaagtgacagagtttatgcatctgtttaggacattgttgtagcttaaaccaagttaaactttcctttccatcaaataggttgaatgaagtaa |
201 |
Q |
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| T |
24370524 |
tgtttactaaagtgacagagtttatgcatctgtttaggacattgttgtagcttaaaccaagttaaactttcctttccatcaaataggttgagtgaagtaa |
24370623 |
T |
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| Q |
202 |
taaccttcacctttggttgtagatgaacttcattttgaaatattttgaaggaaatgtctatggt |
265 |
Q |
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| T |
24370624 |
taaccttcacctttggttgtagctgaacttcattttgaaatattttgaaggaaatgtctatggt |
24370687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 28 - 149
Target Start/End: Complemental strand, 24364093 - 24363972
Alignment:
| Q |
28 |
gaaagtggactgaaatcaggagatgtttgtgtctttgagttgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacagagtttatg |
127 |
Q |
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| T |
24364093 |
gaaagtggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgtttactaaagtgacagagtttatg |
24363994 |
T |
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| Q |
128 |
catctgtttaggacattgttgt |
149 |
Q |
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| T |
24363993 |
cgtctgttttagagattgttgt |
24363972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 24362870 - 24362979
Alignment:
| Q |
10 |
tggtacttatttgcaagagaaagtggactgaaatcaggagatgtttgtgtctttgagttgataaacaagaaagatttggtttttaaagttcatgttttct |
109 |
Q |
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|||| ||| |||||||| |||||||||||| |||| |||||||||||||||||||| ||| ||||||| ||||||| ||||||||| |||||||||| | |
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| T |
24362870 |
tggtccttgtttgcaagtgaaagtggactgcaatcgggagatgtttgtgtctttgaactgacaaacaagcaagatttagtttttaaaattcatgttttat |
24362969 |
T |
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| Q |
110 |
aaagtgacag |
119 |
Q |
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|||| ||||| |
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| T |
24362970 |
aaagggacag |
24362979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 24356025 - 24356127
Alignment:
| Q |
10 |
tggtacttatttgcaagagaaagtggactgaaatcaggagatgtttgtgtctttgagttgataaacaagaaagatttggtttttaaagttcatgttttct |
109 |
Q |
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|||| ||| ||||||||||||||||||||| || |||| ||||||||||||| || ||||||||||| ||| ||| |||||||||||||||||||||| |
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| T |
24356025 |
tggtccttgtttgcaagagaaagtggactgcaacaaggaaatgtttgtgtcttcgaactgataaacaaggaaggtttagtttttaaagttcatgttttct |
24356124 |
T |
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| Q |
110 |
aaa |
112 |
Q |
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||| |
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| T |
24356125 |
aaa |
24356127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 24346918 - 24347003
Alignment:
| Q |
10 |
tggtacttatttgcaagagaaagtggactgaaatcaggagatgtttgtgtctttgagttgataaacaagaaagatttggtttttaa |
95 |
Q |
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| T |
24346918 |
tggtccttgtttgctagagaaagtggactgcaagcaggagatgtttgtgtctttgaactgataaacaagaaggatttggtttttaa |
24347003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 24359363 - 24359454
Alignment:
| Q |
19 |
tttgcaagagaaagtggactgaaatcaggagatgtttgtgtctttgagttgataaacaagaaagatttggtttttaaagttcatgttttcta |
110 |
Q |
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|||||||| ||||||||||| ||| ||||||||||||||||||||| | ||||||||| ||||||| ||||||||||||||| ||||||| |
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| T |
24359363 |
tttgcaagtgaaagtggactaaaacatggagatgtttgtgtctttgagctcataaacaaggaagatttagtttttaaagttcatattttcta |
24359454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 24352660 - 24352746
Alignment:
| Q |
50 |
atgtttgtgtctttgagttgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacagagtttatgcatctgttt |
136 |
Q |
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| T |
24352660 |
atgtttgtgtctttgaactgataaacaaggaaaatttagtttttaaagttcatgttttctaaaggaacagagttgatgtatctgttt |
24352746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 24314062 - 24314129
Alignment:
| Q |
52 |
gtttgtgtctttgagttgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacag |
119 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||| |||||| || | |||||||||| |
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| T |
24314062 |
gtttgtgtctttgaactgataaacaagaaggatttggtttttaatgttcatattaccaaaagtgacag |
24314129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 263
Target Start/End: Complemental strand, 24363956 - 24363889
Alignment:
| Q |
196 |
aagtaataaccttcacctttggttgtagatgaacttcattttgaaatattttgaaggaaatgtctatg |
263 |
Q |
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|||| |||| |||||| ||||||||||| || | || | |||||||||||||||||||||| |||||| |
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| T |
24363956 |
aagtgataatcttcacatttggttgtagttgtatttaagtttgaaatattttgaaggaaatatctatg |
24363889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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