View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_219 (Length: 273)
Name: NF10855A_low_219
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_219 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 38447081 - 38447296
Alignment:
| Q |
15 |
gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38447081 |
gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa |
38447180 |
T |
|
| Q |
115 |
aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgaggtatttttg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38447181 |
aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtttggtggattcaaatggtctaaaatcgctcgcgaggtatttttg |
38447280 |
T |
|
| Q |
215 |
ttcatgttttactttc |
230 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
38447281 |
ttcatgttttactttc |
38447296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 38180615 - 38180792
Alignment:
| Q |
15 |
gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||| || | || ||| || | ||| | |||||| ||| | |||||||||||| ||||| ||| | ||| || |
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| T |
38180615 |
gaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaa |
38180714 |
T |
|
| Q |
115 |
aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa |
192 |
Q |
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|||||||||||||||| |||||||| || |||||| ||| |||| || |||||||||| ||||||||||||||| |
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| T |
38180715 |
aaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa |
38180792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 38190516 - 38190339
Alignment:
| Q |
15 |
gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||| || | || ||| || | ||| | |||||| ||| | |||||||||||| ||||| ||| | ||| || |
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| T |
38190516 |
gaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaa |
38190417 |
T |
|
| Q |
115 |
aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa |
192 |
Q |
| |
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|||||||||||||||| |||||||| || |||||| ||| |||| || |||||||||| ||||||||||||||| |
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| T |
38190416 |
aaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa |
38190339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 38207839 - 38208016
Alignment:
| Q |
15 |
gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||| || | || ||| || | ||| | |||||| ||| | |||||||||||| ||||| ||| | ||| || |
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| T |
38207839 |
gaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaa |
38207938 |
T |
|
| Q |
115 |
aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa |
192 |
Q |
| |
|
|||||||||||||||| |||||||| || |||||| ||| |||| || |||||||||| ||||||||||||||| |
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| T |
38207939 |
aaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa |
38208016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 38217741 - 38217564
Alignment:
| Q |
15 |
gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||| || | || ||| || | ||| | |||||| ||| | |||||||||||| ||||| ||| | ||| || |
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| T |
38217741 |
gaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaa |
38217642 |
T |
|
| Q |
115 |
aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa |
192 |
Q |
| |
|
|||||||||||||||| |||||||| || |||||| ||| |||| || |||||||||| ||||||||||||||| |
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|
| T |
38217641 |
aaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa |
38217564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 38455975 - 38456152
Alignment:
| Q |
15 |
gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||| || | || ||| || | ||| | |||||| ||| | |||||||||||| ||||| ||| | ||| || |
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|
| T |
38455975 |
gaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaa |
38456074 |
T |
|
| Q |
115 |
aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa |
192 |
Q |
| |
|
|||||||||||||||| |||||||| || |||||| ||| |||| || |||||||||| ||||||||||||||| |
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|
| T |
38456075 |
aaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa |
38456152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 192
Target Start/End: Complemental strand, 26033586 - 26033464
Alignment:
| Q |
70 |
aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaag |
169 |
Q |
| |
|
|||||| ||| | |||||||||||| |||| ||| | ||| |||||||||||||||||| |||||||||||| ||||| ||| ||| ||| ||| |
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|
| T |
26033586 |
aagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctataaaaag |
26033487 |
T |
|
| Q |
170 |
tatggtggattcaaatggtctaa |
192 |
Q |
| |
|
||||||| ||||||||||||||| |
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|
| T |
26033486 |
tatggtgaattcaaatggtctaa |
26033464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 38342378 - 38342593
Alignment:
| Q |
15 |
gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa |
114 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| ||| |||||| | ||| |
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|
| T |
38342378 |
gaaccggaaattggaaagaggtatcaaagaacacgggacttgcacactgtggaaacagttgccgttttagatggtataatactctacgacctgatttaag |
38342477 |
T |
|
| Q |
115 |
aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgagg--tatttt |
212 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||| ||||| ||||| | |||| ||||| |||||||||||||| || |||| ||||| |||||| |
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|
| T |
38342478 |
aaagggtccatttagcaaagaagaagaagaaaaattctttgagttattttctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttt |
38342577 |
T |
|
| Q |
213 |
tgttcatgttttactt |
228 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
38342578 |
tgttcatgctttactt |
38342593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 38446571 - 38446786
Alignment:
| Q |
15 |
gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa |
114 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| ||| |||||| | ||| |
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|
| T |
38446571 |
gaaccggaaattggaaagaggtatcaaagaacacgggacttgcacactgtggaaacagttgccgttttagatggtataatactctacgacctgatttaag |
38446670 |
T |
|
| Q |
115 |
aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgagg--tatttt |
212 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||| ||||| ||||| | |||| ||||| |||||||||||||| || |||| ||||| |||||| |
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|
| T |
38446671 |
aaagggtccatttagcaaagaagaagaagaaaaattctttgagttattttctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttt |
38446770 |
T |
|
| Q |
213 |
tgttcatgttttactt |
228 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
38446771 |
tgttcatgctttactt |
38446786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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