View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_228 (Length: 270)
Name: NF10855A_low_228
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_228 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 35 - 270
Target Start/End: Original strand, 2619584 - 2619819
Alignment:
| Q |
35 |
tttttgttaatttgttaagtacaaacactgtcatgaaactaacacagacagatcgatgacacatgtatcaatttgagagaaaatgaatcattttcatgta |
134 |
Q |
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| T |
2619584 |
tttttgttaatttgttaagtacaaacactgtcatgaaactaacacagacagatcaatgacacatgtatcaatttgagagaaaatgaatcattttaatgta |
2619683 |
T |
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| Q |
135 |
atcacatgtgtcgacgacactgacacatgacaaacactggacacatcttcaatcagacgtgtcggtgctacaaagttgttaattatatattttttcttat |
234 |
Q |
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| T |
2619684 |
atcacatgtgtcgacgacactgacacatgacaaacactggacacgccttcaatcagaagtgtcgatgctacaaagttgttaattatatattttttcctat |
2619783 |
T |
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| Q |
235 |
gtggcagggctttaggagctggtttatcaaatgtga |
270 |
Q |
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| T |
2619784 |
gtggcagggctttaggagctggtctatcaaatgtga |
2619819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 270
Target Start/End: Original strand, 2585914 - 2586129
Alignment:
| Q |
55 |
acaaacactgtcatgaaactaacacagacagatcgatgacacatgtatcaatttgagagaaaatgaatcattttcatgtaatcacatgtgtcgacg---a |
151 |
Q |
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| T |
2585914 |
acaaacacttacacgaaaataacacagacaaatcgac-acacata-atcaatttgaga--aaatgaatcattttaaagtaatcacatgtgtcagcgtaga |
2586009 |
T |
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| Q |
152 |
cactgacacatgacaaacactggacacatcttcaatcagacgtgtcggtgctacaaagttgttaattatatat-tttttcttatgtggcagggctttagg |
250 |
Q |
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| T |
2586010 |
cagtgacacgtaacagacactggacacaccattaatcagaagtgtcggttctacaaagttgttgattatatatatttttcttatgtggcagggctttagg |
2586109 |
T |
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| Q |
251 |
agctggtttatcaaatgtga |
270 |
Q |
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| T |
2586110 |
agctggtatgtcaaatgtga |
2586129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 2677842 - 2677765
Alignment:
| Q |
194 |
tgtcggtgctacaaagttgttaattatata-ttttttcttatgtggcagggctttaggagctggtttatcaaatgtga |
270 |
Q |
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| T |
2677842 |
tgtcgttgctaaatagttgttaattatataattttttcttatgtggtagggctttaggagctggtttatcaaatgtga |
2677765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 2645403 - 2645327
Alignment:
| Q |
194 |
tgtcggtgctacaaagttgttaattatatattttttcttatgtggcagggctttaggagctggtttatcaaatgtga |
270 |
Q |
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| T |
2645403 |
tgtcggtgttataatgttgttaattatatatttttccttatgtgacaggactttaggagctgttttatcaaatgtga |
2645327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 2600552 - 2600495
Alignment:
| Q |
213 |
ttaattatatattttttcttatgtggcagggctttaggagctggtttatcaaatgtga |
270 |
Q |
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| T |
2600552 |
ttaattaaatattttcccttatgagatagggctttcggagctggtttatcaaatgtga |
2600495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 36398525 - 36398559
Alignment:
| Q |
174 |
gacacatcttcaatcagacgtgtcggtgctacaaa |
208 |
Q |
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| T |
36398525 |
gacacatcttcaatcagaagtgtcggtgctacaaa |
36398559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 8203892 - 8203940
Alignment:
| Q |
154 |
ctgacacatgacaaacactggacacatcttcaatcagacgtgtcggtgc |
202 |
Q |
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| T |
8203892 |
ctgacacatgacaaacactggacacaccttctgtcagaagtgtcagtgc |
8203940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 16771289 - 16771345
Alignment:
| Q |
150 |
gacactgacacatgacaaacactggacacatcttcaatcagacgtgtcggtgctaca |
206 |
Q |
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| T |
16771289 |
gacacagacacatgttgaacactggacacaccttcaatcagaagtgtcgatgctaca |
16771345 |
T |
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