View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_242 (Length: 263)
Name: NF10855A_low_242
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_242 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 15730218 - 15730456
Alignment:
| Q |
19 |
acatcactgaggaacatggtcacaaagggtggattctgaataatcttaatgcttctcatcttgattactactatgcatttttggctatactaaatgtctt |
118 |
Q |
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| T |
15730218 |
acatcactgaggaacatggtcacaaagggtggattttgaataatcttaatgcttctcatcttgattactactatgcatttttggctatactaaatgtctt |
15730317 |
T |
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| Q |
119 |
gaactttatattcttttgtattgttacaaagtattatgtatatagagctgaaatttcaaattccataaaagtgcttgcagaagaattgaagtagaagatt |
218 |
Q |
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| T |
15730318 |
gaactttatcttcttttgtattgttacgaagtattatgtatatagagctgaaatttcagattccataaaagtgcttgcagaagaattgaaggagaagaca |
15730417 |
T |
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| Q |
219 |
agtgttgtgtcataccaagtgattacaagagattagttt |
257 |
Q |
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| T |
15730418 |
agtgttgtgtcataccaagtgattccaagagattagttt |
15730456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 15737821 - 15738053
Alignment:
| Q |
19 |
acatcactgaggaacatggtcacaaagggtggattctgaataatcttaatgcttctcatcttgattactactatgcatttttggctatactaaatgtctt |
118 |
Q |
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| T |
15737821 |
acatcactgaggaacatggtcacaaagggtggattttgaataatcttaatgcttctcatcttgattactactatgcatttttggcaatactaaatgtctt |
15737920 |
T |
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| Q |
119 |
gaactttatattcttttgtattgttacaaagtattatgtatatagagctgaaatttcaaattccataaaagtgcttgcagaagaattgaagtagaagatt |
218 |
Q |
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| T |
15737921 |
gaactttatcttcttttgtattgttacaaagtattatgtatatagagctgaaatttcagattccataaaagtgcttgcagaagaattgaagtagaaaact |
15738020 |
T |
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| Q |
219 |
agtgttgtgtcataccaagtgattacaagagattagttt |
257 |
Q |
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| T |
15738021 |
a-----gtgtcata-caagtgactacaagagattagttt |
15738053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 15766787 - 15766960
Alignment:
| Q |
22 |
tcactgaggaacatggtcacaaagggtggattctgaataatcttaatgcttctcatcttgattactactatgcatttttggctatactaaatgtcttgaa |
121 |
Q |
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|||||||| |||| |||| | |||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
15766787 |
tcactgagaaacacggtcgccgagggtggattttgaataacttgaatgcttctcatcttgattactactatgcatttttggctatactaaatgtcataaa |
15766886 |
T |
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| Q |
122 |
ctttatattcttttgtattgttacaaagtattatgtatatagagctgaaatttcaaattccataaaagtgcttg |
195 |
Q |
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| T |
15766887 |
ctttgtcttctttgtggttgtttcaaagttctatgtgcatagagctgacatttcaaattctctaaaagttcttg |
15766960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 15755940 - 15756030
Alignment:
| Q |
44 |
agggtggattctgaataatcttaatgcttctcatcttgattactactatgcatttttggctatactaaatgtcttgaactttatattcttt |
134 |
Q |
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| T |
15755940 |
agggtggattttgaataacttgaatgcttctcatcttgattactactatgcatttttggccatactaaatgtcttgaactttgtcttcttt |
15756030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 15779932 - 15780034
Alignment:
| Q |
31 |
aacatggtcacaaagggtggattctgaataatcttaatgcttctcatcttgattactactatgcatttttggctatactaaatgtcttgaactttatatt |
130 |
Q |
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| T |
15779932 |
aacatagtcaccaagggtggattttgaacaacctaaatgcttctcatcttgattactactacgcatttttggcaatactaaatgccctgaacttcatttt |
15780031 |
T |
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| Q |
131 |
ctt |
133 |
Q |
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||| |
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| T |
15780032 |
ctt |
15780034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 33411508 - 33411436
Alignment:
| Q |
28 |
aggaacatggtcacaaagggtggattctgaataatcttaatgcttctcatcttgattactactatgcattttt |
100 |
Q |
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||||||||||||| |||||||||||| |||| ||||| |||| |||||||||||||||||||||||| ||||| |
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| T |
33411508 |
aggaacatggtcataaagggtggattttgaacaatctgaatgattctcatcttgattactactatgcgttttt |
33411436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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