View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_254 (Length: 259)
Name: NF10855A_low_254
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_254 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 17435823 - 17435581
Alignment:
| Q |
12 |
atgaataataccgacacactcaattattttatgtcaaacaaagcctaactctgtcgtttccaggctctctttttgaggtacacagtctcttcttcatgct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
17435823 |
atgaataataccgacacactcaattattttatgtcaaacaaagcctaactctgtcgtttccaggctctctttttgaggtacacaatctcttctacatgct |
17435724 |
T |
|
| Q |
112 |
cttgtttcttgtattgctgagaatttcttcagttttacaattcatatgacgcaaaacttcaatttggtgtcagattccatattaatattctttcatatat |
211 |
Q |
| |
|
||||||| || ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
17435723 |
cttgtttgttatatagctgagaatttcttcagttttacaattcatatgacgcaaaatctcaatttggtgtcagattttatattaatatcctttcatatat |
17435624 |
T |
|
| Q |
212 |
ccaatcttgatcatatacttgcatagtactcagcactttttgt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17435623 |
ccaatcttgatcatatacttgcatagtactcaacactttttgt |
17435581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 17456897 - 17456753
Alignment:
| Q |
13 |
tgaataataccgacacactcaattattttatgtcaaacaaagcctaactctgtcgtttccaggctctctttttgaggtacacagtctcttcttcatgctc |
112 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
17456897 |
tgaataatatcaacacactcaattattttatgtcaaacaaagcctaactctgtcgtttccaggctctctttttgaggtacacaatctcttctacatgctt |
17456798 |
T |
|
| Q |
113 |
ttgtttcttgtattgctgagaatttcttcagttttacaattcata |
157 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17456797 |
ttgtttcttgtattgctgagaatttctccagttttacaattcata |
17456753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 17456701 - 17456657
Alignment:
| Q |
199 |
ttctttcatatatccaatcttgatcatatacttgcatagtactca |
243 |
Q |
| |
|
|||||||||||||||| | || ||||||||||||||||| ||||| |
|
|
| T |
17456701 |
ttctttcatatatccattttttatcatatacttgcatagcactca |
17456657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University