View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_258 (Length: 257)
Name: NF10855A_low_258
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_258 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 13945392 - 13945147
Alignment:
| Q |
8 |
ccaagaatatttttcaatatttagaatgatggatgcttctccaagtgcagcttggttgtgatcctaatctgctatgaatgacatcagttgttggatatta |
107 |
Q |
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| T |
13945392 |
ccaaaaatatttttcaatatttagaatgatggatggttctccaagtgtagcttggttgtgatcctaatctgctatgaatgacatcagttgttggatatta |
13945293 |
T |
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| Q |
108 |
gttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcgttgaacatccttaagtttttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13945292 |
gttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcgttgaacatccttaagtttttg |
13945193 |
T |
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| Q |
208 |
aaacttaaacctccctcaaatttaggtttaaagagagtttccttct |
253 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13945192 |
aaacctaaacctccctcaaatttaggtttaaagagagtttccttct |
13945147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 14086581 - 14086336
Alignment:
| Q |
8 |
ccaagaatatttttcaatatttagaatgatggatgcttctccaagtgcagcttggttgtgatcctaatctgctatgaatgacatcagttgttggatatta |
107 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14086581 |
ccaaaaatatttttcaatatttagaatgatggatggttctccaagtgtagcttggttgtgatcctaatctgctatgaatgacatcagttgttggatatta |
14086482 |
T |
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| Q |
108 |
gttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcgttgaacatccttaagtttttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14086481 |
gttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcgttgaacatccttaagtttttg |
14086382 |
T |
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| Q |
208 |
aaacttaaacctccctcaaatttaggtttaaagagagtttccttct |
253 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14086381 |
aaacctaaacctccctcaaatttaggtttaaagagagtttccttct |
14086336 |
T |
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