View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_260 (Length: 256)
Name: NF10855A_low_260
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_260 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 41311264 - 41311027
Alignment:
| Q |
1 |
ttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtc |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311264 |
ttgggtcgttcttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtc |
41311165 |
T |
|
| Q |
101 |
agagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311164 |
agagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatg |
41311065 |
T |
|
| Q |
201 |
cctacacttaagatatgggtgatgcaagaatacacaat |
238 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
41311064 |
cctacacttaagatatgggtgatgcaagaatacgcaat |
41311027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 233
Target Start/End: Complemental strand, 43164940 - 43164710
Alignment:
| Q |
3 |
gggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcag |
102 |
Q |
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||||||||||||||||||||||||||||||||| ||||| || || |||||||||| |||||||||||||||| |||||||||||||| |||| |||||| |
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| T |
43164940 |
gggtcgttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgatttaaaggaaaagacaatgtcag |
43164841 |
T |
|
| Q |
103 |
agactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcc |
202 |
Q |
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||| |||||| ||||||| |||||||||||||| ||| | | ||||||||||| ||||| || || ||||||| || |||||||||||||||||| | |
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| T |
43164840 |
agattgctcttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatcagcgtatggaatatggagatgtc |
43164741 |
T |
|
| Q |
203 |
tacacttaagatatgggtgatgcaagaatac |
233 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |
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| T |
43164740 |
tacacttaagatatgggtaatgcaagaatac |
43164710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 30165663 - 30165883
Alignment:
| Q |
1 |
ttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtc |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||| |||| || | |
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| T |
30165663 |
ttgggtcgttcttcaatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatggc |
30165762 |
T |
|
| Q |
101 |
agagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatg |
200 |
Q |
| |
|
||||| ||||| ||| ||| || || | ||| |||||||||||||| |||||||| ||||||| |||||||||||| |||||| | |
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| T |
30165763 |
agagatagctcttccaaatgattgttctcgtg------------gaatttatgatttgttggtatttcatggacttatcagtgtatggaatgtggagagg |
30165850 |
T |
|
| Q |
201 |
cctacacttaagatatgggtgatgcaagaatac |
233 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |
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|
| T |
30165851 |
tctacagttaagatatgggtgatgcaagaatac |
30165883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 30125218 - 30124981
Alignment:
| Q |
1 |
ttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtc |
100 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||| || || || || |||| | | |||||||||| |||||||||||||||||||| |||| |||| |
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| T |
30125218 |
ttgggttgttcttgaatgggactattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaaggaagcgacaatgtc |
30125119 |
T |
|
| Q |
101 |
agagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatg |
200 |
Q |
| |
|
||| | ||||| ||| ||| |||||||| ||||||||| || | |||||||||| | |||||||| ||||||| ||| |||||| | | |||||| |
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| T |
30125118 |
agaaatagctcttccaaatgatttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatggattcttgagatg |
30125019 |
T |
|
| Q |
201 |
cctacacttaagatatgggtgatgcaagaatacacaat |
238 |
Q |
| |
|
| || |||||||| |||||||||| |||||| |||| |
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| T |
30125018 |
gatgcagttaagatacgggtgatgcatgaatacgcaat |
30124981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 28181080 - 28180965
Alignment:
| Q |
20 |
ttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagat |
119 |
Q |
| |
|
|||||||||||||||| ||||| || || |||| |||| | |||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||| |
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|
| T |
28181080 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagat |
28180981 |
T |
|
| Q |
120 |
ggtttttatagtgatt |
135 |
Q |
| |
|
| ||||||||| |||| |
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|
| T |
28180980 |
gatttttatagggatt |
28180965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 30131170 - 30131068
Alignment:
| Q |
3 |
gggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcag |
102 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| ||||| || || |||| || |||||||||||| |||||| ||||||||||||||||| |||||| |
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| T |
30131170 |
gggttgttcttgaatggggctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgacaatgtcag |
30131071 |
T |
|
| Q |
103 |
aga |
105 |
Q |
| |
|
||| |
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|
| T |
30131070 |
aga |
30131068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 30120172 - 30120068
Alignment:
| Q |
1 |
ttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtc |
100 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| || || || || || |||| | ||| |||||||||||||||||||||||||||||| |||| | || |
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|
| T |
30120172 |
ttgggttgttcttgaatggggctattcattgggtggttcataatcatgagaccaacatgaatgttattattgcctttgatttaaaggaaacgacaatatc |
30120073 |
T |
|
| Q |
101 |
agaga |
105 |
Q |
| |
|
||||| |
|
|
| T |
30120072 |
agaga |
30120068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
203 |
tacacttaagatatgggtgatgcaagaatacaca |
236 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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|
| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 21426642 - 21426703
Alignment:
| Q |
59 |
ggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatg |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||||| |
|
|
| T |
21426642 |
ggatgttattattgcccttgatttaaaggaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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