View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_27 (Length: 441)
Name: NF10855A_low_27
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_27 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 5 - 441
Target Start/End: Complemental strand, 2469068 - 2468632
Alignment:
| Q |
5 |
aaacaaagaagatatcacaagggaatccaaatcacaggaaacattaaaacatacgcaagtgcgccaaatgtcccaacgaaaacaacaccggctgaatttc |
104 |
Q |
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|||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2469068 |
aaacaaagaacataacacaagggaatctaaatcacaggaaacattaaaacatacgcaagtgcgccaaatgtcccaacgaaaacaacactggctgaatttc |
2468969 |
T |
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| Q |
105 |
tagctgctaacaatgcctgcataaacatcaaacactcaaatcaaacttatttccagagattccactttcatttttatctcatcaataacaaaattcttca |
204 |
Q |
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| T |
2468968 |
tagctgctaacaatgcctgcataaacatcaaacactcaaatcaaacttatttcaacagcttcccccttcatttttatctcatcaataaccaaattcttca |
2468869 |
T |
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| Q |
205 |
aataaatcttaacagaaaggaggttattgttttttaatatcacagtttcatttcttcattgttttgtatttggtttgaaaagaatgaaaatgagaaaaat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2468868 |
aataaatcttaacagaaaggaggttattgttttttaatatcacagtttgatttcttcattgttttgtatttggtttgaaaagaatgaaaatgagaaaaat |
2468769 |
T |
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| Q |
305 |
atcacaataacaagtgatttatgtgcactcactgcaatgaaaaaagtcttgtctcccagttcagagaaaaatatcagcaaaaatgcctgtgatagagcat |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2468768 |
atcacaataacaagtgatttatgtgcactcactgcaatgaaaaaagtcttgtctcccagttcagagaaaaatatcagcaaaaatgcctgtgatagagcat |
2468669 |
T |
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| Q |
405 |
aaaacaataagagaacaatattagtctttgaatatca |
441 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2468668 |
aaaacaataagagaacaatattagtctttgaatatca |
2468632 |
T |
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