View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_276 (Length: 253)
Name: NF10855A_low_276
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_276 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 39433290 - 39433056
Alignment:
| Q |
7 |
gttttttaactgataaattagtgatcaaccagctatttataaacttgtgtcttaagaaacaatatttcatgaaaagaaacatcattttattctcttttaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39433290 |
gttttttaactgataaattagtgatcaaccagctatttataaacttgtgtcttaagaaacaatatttcatgaaaagaaacatcattttattctcttttaa |
39433191 |
T |
|
| Q |
107 |
aattatgctattaacaagagccaccttattaataaaaagtgactttaaagtctcaaatgacagagttaaacaatatagaacaaccaaacctattgatttt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39433190 |
aattatgctattaacaagagccaccttattaataaaaagtgactttaaagtctcaaatgacagagttaaacaatatagaacaaccaaacctattgatttt |
39433091 |
T |
|
| Q |
207 |
ccaatgtaattaattttattatatatgcatatatt |
241 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
39433090 |
ccaatgtaattaattttattatatgtgcatatatt |
39433056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University