View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_281 (Length: 251)

Name: NF10855A_low_281
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_281
NF10855A_low_281
[»] chr7 (3 HSPs)
chr7 (1-234)||(3437088-3437321)
chr7 (3-128)||(14798952-14799077)
chr7 (3-128)||(15245944-15246069)
[»] chr3 (3 HSPs)
chr3 (1-226)||(46240158-46240383)
chr3 (4-224)||(23541555-23541775)
chr3 (52-225)||(30038134-30038307)
[»] chr5 (1 HSPs)
chr5 (49-225)||(29878233-29878409)
[»] chr8 (1 HSPs)
chr8 (67-225)||(3921199-3921357)
[»] chr4 (3 HSPs)
chr4 (49-225)||(6869027-6869201)
chr4 (70-225)||(4497222-4497377)
chr4 (3-116)||(11318291-11318404)
[»] scaffold0300 (1 HSPs)
scaffold0300 (70-225)||(18134-18289)
[»] chr6 (1 HSPs)
chr6 (70-225)||(24676042-24676197)
[»] scaffold0140 (1 HSPs)
scaffold0140 (4-104)||(40053-40153)
[»] chr1 (1 HSPs)
chr1 (122-225)||(36915336-36915439)
[»] scaffold0121 (1 HSPs)
scaffold0121 (3-116)||(43494-43607)
[»] chr2 (1 HSPs)
chr2 (3-116)||(18131561-18131674)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 3437321 - 3437088
Alignment:
Q  1 ggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  3437321 ggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatggtggtcaactgctcattgctgttggtagagacccaaatgaccagtact 3437222  T
Q  101 ttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437221 ttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgt 3437122  T
Q  201 attcatatcagatcagcagaaggtaagtgatgtc 234  Q
    ||||||||||||||||||||||||||||| ||||    
T  3437121 attcatatcagatcagcagaaggtaagtgttgtc 3437088  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 14799077 - 14798952
Alignment:
Q  3 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 102  Q
    |||||| ||||||||||| |||||||| ||||| || |||||||| ||||| |||||| |  |  | ||||| || ||||| |||||||| || ||||||    
T  14799077 atgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaattgttggtggctgtaggaagagatccaaatgatcaatacttt 14798978  T
Q  103 cctcttgcatttggcattgttgaaac 128  Q
    ||| | || |||||  ||||||||||    
T  14798977 cctttagcttttggtgttgttgaaac 14798952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 15246069 - 15245944
Alignment:
Q  3 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 102  Q
    |||||| ||||||||||| |||||||| ||||| || |||||||| ||||| |||||| |  |  | ||||| || ||||| |||||||| || ||||||    
T  15246069 atgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaattgttggtggctgtaggaagagatccaaatgatcaatacttt 15245970  T
Q  103 cctcttgcatttggcattgttgaaac 128  Q
    ||| | || |||||  ||||||||||    
T  15245969 cctttagcttttggtgttgttgaaac 15245944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 46240158 - 46240383
Alignment:
Q  1 ggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtact 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46240158 ggatgtaggccatttattggggttgatggttgtcatctaaagacaaagtatgggggtcaactgctcattgctgttggtagagacccaaatgaccagtact 46240257  T
Q  101 ttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240258 ttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgt 46240357  T
Q  201 attcatatcagatcagcagaaggtaa 226  Q
    ||||||||||||||||||||||||||    
T  46240358 attcatatcagatcagcagaaggtaa 46240383  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 23541555 - 23541775
Alignment:
Q  4 tgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttc 103  Q
    ||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||||||||| || || | ||||||||| |||||||||||||| || ||||    
T  23541555 tgtagaccatttgttggggtagatggatgtcatttaaagacaaagtatgggggtcaacttctaatagttgttggtagggacccaaatgaccaatattttc 23541654  T
Q  104 ctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtatt 203  Q
    |  | |||||||| || || |||||  |||| |||| ||||||||| |||||||||||| |  |  ||||||||||||| |  ||||  |||||||| ||    
T  23541655 cattggcatttggaatagtagaaacaaagtgtagggaaagctggaaatggttcatggagcttttaatggatgacattggaagggataggagatatgtctt 23541754  T
Q  204 catatcagatcagcagaaggt 224  Q
    |||||||||||| ||||||||    
T  23541755 catatcagatcaacagaaggt 23541775  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 30038307 - 30038134
Alignment:
Q  52 gggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagt 151  Q
    |||||||||||  | |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||  ||||| |    
T  30038307 gggggtcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaacttggaaat 30038208  T
Q  152 ggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 225  Q
    |||||| | |||||||| |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  30038207 ggttcacgcagttgctgatggaagatataggtgaagataagagatatgtgttcatatcagatcaacaaaaggta 30038134  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 225
Target Start/End: Original strand, 29878233 - 29878409
Alignment:
Q  49 tatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga 148  Q
    |||||||| |||||  | |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||| ||||    
T  29878233 tatggggggcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga 29878332  T
Q  149 agtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 225  Q
    | ||||||||  |||||||| |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  29878333 aatggttcatacagttgctgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta 29878409  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 225
Target Start/End: Complemental strand, 3921357 - 3921199
Alignment:
Q  67 attgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgc 166  Q
    |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||| ||||| ||||||||  ||||||    
T  3921357 attgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttggaaatggttcatacagttgc 3921258  T
Q  167 tgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 225  Q
    || |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  3921257 tgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta 3921199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 225
Target Start/End: Original strand, 6869027 - 6869201
Alignment:
Q  49 tatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga 148  Q
    |||||||| |||||  | |||||||| || |||||||||||||||||||||||||| || || |||||  | |||||||||||||||| || ||| ||||    
T  6869027 tatgggggccaactgttgattgctgtagggagagacccaaatgaccagtactttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga 6869126  T
Q  149 agtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 225  Q
    | ||||||||| |||||||| |||| || || ||  |||||  |||| |||| |||||||||||||| || ||||||    
T  6869127 aatggttcatgcagttgctgatggaagatataggtcaagat--aagagatgtgttcatatcagatcaacaaaaggta 6869201  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 70 - 225
Target Start/End: Complemental strand, 4497377 - 4497222
Alignment:
Q  70 gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt 169  Q
    |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||  |||  | | |||||||||||| ||||| |||||| || ||     
T  4497377 gctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagttgaaagtaaggcaagctggaaatggtttatggagctgttga 4497278  T
Q  170 tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 225  Q
    || ||||||| || || |||||||||||||| |||||||||||||| |||||||||    
T  4497277 tgaatgacataggaaatgataaaagatatgtcttcatatcagatcaacagaaggta 4497222  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 11318404 - 11318291
Alignment:
Q  3 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 102  Q
    |||||| || ||||| || |||||||| |||||||||||||| |  ||||| || ||||| || ||||| ||||  |||||||||||||| || || |||    
T  11318404 atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttgcaagagacccaaatgatcaatatttt 11318305  T
Q  103 cctcttgcatttgg 116  Q
    ||| | ||||||||    
T  11318304 cctttagcatttgg 11318291  T

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Target: scaffold0300 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 225
Target Start/End: Original strand, 18134 - 18289
Alignment:
Q  70 gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt 169  Q
    |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||   ||  | | |||||||||||| ||||| |||||| || ||     
T  18134 gctgttggaagggaccccaatgaccagtattttcccctggcctttggtgttgttgaagtagaaagtaaggcaagctggaaatggtttatggagctgttga 18233  T
Q  170 tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 225  Q
    || ||||||| || || || ||||||||||| |||||||||||||| |||||||||    
T  18234 tgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta 18289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 225
Target Start/End: Complemental strand, 24676197 - 24676042
Alignment:
Q  70 gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt 169  Q
    |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||   ||  | | |||||||||||| ||||| |||||| || ||     
T  24676197 gctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagtagaaagtaaggcaagctggaaatggtttatggagctgttga 24676098  T
Q  170 tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 225  Q
    || ||||||| || || || ||||||||||| |||||||||||||| |||||||||    
T  24676097 tgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta 24676042  T

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Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 40153 - 40053
Alignment:
Q  4 tgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttc 103  Q
    |||||||| ||||| || |||||||| |||||||| ||||| |||||||| |||   ||  | |||| ||||||||||||||||||||||||||| ||||    
T  40153 tgtaggccctttataggagttgatgggtgtcatcttaagaccaagtatggaggtactcttttaattgttgttggtagagacccaaatgaccagtattttc 40054  T
Q  104 c 104  Q
    |    
T  40053 c 40053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 36915336 - 36915439
Alignment:
Q  122 ttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaa 221  Q
    ||||||||||||||| || ||| ||||| ||||||||| |||||||  |||| || || ||  ||||||| |||||||| |||||||||||||| || ||    
T  36915336 ttgaaactgagtgcaaggaaagttggaaatggttcatgcagttgctaatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaa 36915435  T
Q  222 ggta 225  Q
    ||||    
T  36915436 ggta 36915439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 43494 - 43607
Alignment:
Q  3 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 102  Q
    |||||| || ||||| || |||||||| |||||||||||||| |  ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||    
T  43494 atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatatttt 43593  T
Q  103 cctcttgcatttgg 116  Q
    ||| | ||||||||    
T  43594 cctttagcatttgg 43607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 18131674 - 18131561
Alignment:
Q  3 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 102  Q
    |||||| || ||||| || |||||||| |||||||||||||| |  ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||    
T  18131674 atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatatttt 18131575  T
Q  103 cctcttgcatttgg 116  Q
    ||| | ||||||||    
T  18131574 cctttagcatttgg 18131561  T

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