View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_299 (Length: 250)
Name: NF10855A_low_299
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_299 |
 | |
|
| [»] scaffold0927 (1 HSPs) |
| |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] scaffold1033 (1 HSPs) |
| | |
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| [»] scaffold1029 (1 HSPs) |
| | |
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| [»] scaffold1126 (1 HSPs) |
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| [»] scaffold0870 (1 HSPs) |
| | |
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Alignment Details
Target: scaffold0927 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0927
Description:
Target: scaffold0927; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 365 - 596
Alignment:
| Q |
19 |
acatcagggtatttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcag |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
365 |
acatcaggatatttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattatggtcgcaaatcag |
464 |
T |
|
| Q |
119 |
ttttcatcatcattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
465 |
ttttcatcatcattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaac |
564 |
T |
|
| Q |
219 |
atgtcaagtcattgcttaatgttagtgttggg |
250 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |
|
|
| T |
565 |
atgtcaagtcattgattaatgttagtgttggg |
596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 28 - 250
Target Start/End: Complemental strand, 28566579 - 28566357
Alignment:
| Q |
28 |
tatttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatca |
127 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
28566579 |
tatttccagtgaagacgtgcaacgacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcacaaatcagttttcatca |
28566480 |
T |
|
| Q |
128 |
tcattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagt |
227 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || | |
|
|
| T |
28566479 |
tcattttccaatttttgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaacccgagcctctctaatctccaggaacatgttaact |
28566380 |
T |
|
| Q |
228 |
cattgcttaatgttagtgttggg |
250 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
28566379 |
cattgattaatgttagtgttggg |
28566357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 28 - 250
Target Start/End: Complemental strand, 28584554 - 28584332
Alignment:
| Q |
28 |
tatttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatca |
127 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28584554 |
tatttccagtgaagacgtgcaaggacatgttgctcacatgatttcaaatgaatggaaatttctcaatcaagaaattctggttgcaaatcagttttcatca |
28584455 |
T |
|
| Q |
128 |
tcattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagt |
227 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
28584454 |
tcattttccaacttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaaaccaagcctctctaatctccaggaacatgtcaagt |
28584355 |
T |
|
| Q |
228 |
cattgcttaatgttagtgttggg |
250 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
28584354 |
cattgattaatgttagtgttggg |
28584332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 28 - 250
Target Start/End: Complemental strand, 26314471 - 26314249
Alignment:
| Q |
28 |
tatttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatca |
127 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
26314471 |
tatttccggtgaagacgtgcaaagacatgttgctcacatgatttcaaatgaatggaaacgtctcaatcaagaaattctggttgcaaatcaattttcatca |
26314372 |
T |
|
| Q |
128 |
tcattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagt |
227 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
26314371 |
tcattttccaatttttgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaatccaagcctctctaatctccaggaacatgtcaagt |
26314272 |
T |
|
| Q |
228 |
cattgcttaatgttagtgttggg |
250 |
Q |
| |
|
||||| |||||| ||||| |||| |
|
|
| T |
26314271 |
cattgattaatgctagtggtggg |
26314249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 28 - 250
Target Start/End: Complemental strand, 28573324 - 28573102
Alignment:
| Q |
28 |
tatttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatca |
127 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28573324 |
tatttccggtgaagacgtgcaaagacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggttgcaaatcagttttcatcg |
28573225 |
T |
|
| Q |
128 |
tcattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagt |
227 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
28573224 |
tcattttccaacttttgtctcaatgctgcaagaatggttcccctcatgtaccactataagagcaacccaagcctctctaatctccaggaacatgtcaagt |
28573125 |
T |
|
| Q |
228 |
cattgcttaatgttagtgttggg |
250 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
28573124 |
cattgattaatgttagtgttggg |
28573102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 36 - 237
Target Start/End: Complemental strand, 20615236 - 20615035
Alignment:
| Q |
36 |
gtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatcatcattttc |
135 |
Q |
| |
|
||||||| ||||||| |||||||||| | ||||||| |||||||||||||||||| |||||||||||| || | || || ||| ||||||||||| | |
|
|
| T |
20615236 |
gtgaagatgtgcaaagacatgttgctgagatgattttaaatgaatggaaatgtctaaatcaagaaattttgaacccatatgtatttccatcatcatttac |
20615137 |
T |
|
| Q |
136 |
caatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtcattgctt |
235 |
Q |
| |
|
||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||| ||| | |||||||||||||||||| || |
|
|
| T |
20615136 |
caatttttgccttaatgctgctagaatggttcctctcatgtaccattataagagcaacccaagcctctctagtctaaaggaacatgtcaagtcattgatt |
20615037 |
T |
|
| Q |
236 |
aa |
237 |
Q |
| |
|
|| |
|
|
| T |
20615036 |
aa |
20615035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 28 - 249
Target Start/End: Complemental strand, 24070016 - 24069795
Alignment:
| Q |
28 |
tatttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatca |
127 |
Q |
| |
|
||||||| | ||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
24070016 |
tatttccggcgaagaggtgcaaagacatgttgctcgcatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcacaaataagttttcatca |
24069917 |
T |
|
| Q |
128 |
tcattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagt |
227 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
24069916 |
tcattttccaatttttgtctcaatgctgcaagaatggttctcctcatgtaccactataagagcaactcaagcctctctaatctccaggaacatgtcaagt |
24069817 |
T |
|
| Q |
228 |
cattgcttaatgttagtgttgg |
249 |
Q |
| |
|
||||| |||||||| ||||||| |
|
|
| T |
24069816 |
cattgattaatgttggtgttgg |
24069795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 28 - 249
Target Start/End: Original strand, 24080720 - 24080941
Alignment:
| Q |
28 |
tatttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatca |
127 |
Q |
| |
|
||||||| | ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
24080720 |
tatttccggggaagacgtgcaaagacatgttgctcgcatgatttcaaatgaatggaaatgtctcaatcaagaaattctggttgcaaataagttttcatca |
24080819 |
T |
|
| Q |
128 |
tcattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagt |
227 |
Q |
| |
|
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||| | ||||||||||||| |
|
|
| T |
24080820 |
tcattttccaatttttgtatcaatgctgcaagaatggttcccctcatgtaccactataagagcaaccctagcctatctaatctctaggaacatgtcaagt |
24080919 |
T |
|
| Q |
228 |
cattgcttaatgttagtgttgg |
249 |
Q |
| |
|
|||| |||||||| ||||||| |
|
|
| T |
24080920 |
tattgattaatgttggtgttgg |
24080941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 1 - 107
Alignment:
| Q |
143 |
tgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtcattgcttaatgtta |
242 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
1 |
tgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaatccaagcctctctaatctccaggaacatgtcaagtcattgattaatgttg |
100 |
T |
|
| Q |
243 |
gtgttgg |
249 |
Q |
| |
|
||||||| |
|
|
| T |
101 |
gtgttgg |
107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 1 - 107
Alignment:
| Q |
143 |
tgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtcattgcttaatgtta |
242 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
1 |
tgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaatccaagcctctctaatctccaggaacatgtcaagtcattgattaatgttg |
100 |
T |
|
| Q |
243 |
gtgttgg |
249 |
Q |
| |
|
||||||| |
|
|
| T |
101 |
gtgttgg |
107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1126 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold1126
Description:
Target: scaffold1126; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 2718 - 2617
Alignment:
| Q |
149 |
aatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtcattgcttaatgttagtgttg |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| ||||| || |
|
|
| T |
2718 |
aatgctgctagaatggttcccctcatgtaccactataagagcaatccaagcctctctaatctccaggaacatgtcaagtcattgattaatgctagtggtg |
2619 |
T |
|
| Q |
249 |
gg |
250 |
Q |
| |
|
|| |
|
|
| T |
2618 |
gg |
2617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 242
Target Start/End: Original strand, 2603159 - 2603357
Alignment:
| Q |
47 |
caaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatc---agttttcatcatcattttccaattttt |
143 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| | | | |||| ||||| ||||||||| |||| |||| |
|
|
| T |
2603159 |
caaagacatgttgctaacatgatttcaaatgaatggaaacgtctcaatcaagaaatcataaccccgaatccaattttttcgtcatcatttaccaaatttt |
2603258 |
T |
|
| Q |
144 |
gtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtcattgcttaatgtta |
242 |
Q |
| |
|
| || |||| ||| ||||||||||| |||||||| ||||| |||| ||||| || || || ||||| || || | ||||||||||||| ||||||||| |
|
|
| T |
2603259 |
gccttaatgttgcaagaatggttcctctcatgtatcactaccagagtaatccaagtctttccaatctacaagaccttgtcaagtcattggttaatgtta |
2603357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 2600015 - 2600064
Alignment:
| Q |
53 |
catgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaat |
102 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
2600015 |
catgttgctaacatgatttcaaatgaatggaaacgtctcaaacaagaaat |
2600064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 2591881 - 2591928
Alignment:
| Q |
53 |
catgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaa |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
2591881 |
catgttgctcatatgatttcaaatgaatggaaacgtctgaatcaagaa |
2591928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 4 - 56
Alignment:
| Q |
197 |
agcctctctaatctccatgaacatgtcaagtcattgcttaatgttagtgttgg |
249 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
4 |
agcctctctaatctccaggaacatgtcaagtcattgattaacgttggtgttgg |
56 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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