View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_305 (Length: 250)

Name: NF10855A_low_305
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_305
NF10855A_low_305
[»] chr7 (9 HSPs)
chr7 (16-228)||(23983290-23983502)
chr7 (12-102)||(36449287-36449376)
chr7 (47-150)||(9107308-9107410)
chr7 (188-231)||(36449164-36449207)
chr7 (134-220)||(8745244-8745330)
chr7 (12-74)||(22567909-22567970)
chr7 (55-223)||(3478440-3478607)
chr7 (48-120)||(9427935-9428007)
chr7 (12-60)||(28534308-28534355)
[»] chr2 (15 HSPs)
chr2 (55-228)||(16952207-16952380)
chr2 (55-228)||(17022872-17023045)
chr2 (55-228)||(17060178-17060351)
chr2 (21-246)||(10173368-10173593)
chr2 (38-159)||(20572226-20572346)
chr2 (134-220)||(34230292-34230378)
chr2 (12-91)||(27879932-27880011)
chr2 (15-95)||(12343037-12343116)
chr2 (16-65)||(4974992-4975042)
chr2 (16-65)||(4992900-4992950)
chr2 (134-220)||(7696053-7696139)
chr2 (12-74)||(13699083-13699144)
chr2 (148-218)||(41086715-41086785)
chr2 (12-73)||(22884931-22884991)
chr2 (43-119)||(27740153-27740229)
[»] chr1 (11 HSPs)
chr1 (12-228)||(16577344-16577561)
chr1 (14-217)||(41126271-41126462)
chr1 (12-91)||(38548856-38548934)
chr1 (15-101)||(16148987-16149073)
chr1 (134-220)||(16147649-16147735)
chr1 (12-91)||(38544535-38544613)
chr1 (12-95)||(32882584-32882668)
chr1 (134-220)||(6583120-6583206)
chr1 (134-220)||(31290923-31291009)
chr1 (67-95)||(24659146-24659174)
chr1 (43-119)||(49820311-49820387)
[»] chr5 (7 HSPs)
chr5 (43-237)||(17853881-17854073)
chr5 (15-167)||(26045746-26045901)
chr5 (14-74)||(39183985-39184044)
chr5 (18-102)||(33258665-33258750)
chr5 (43-91)||(24072094-24072142)
chr5 (189-237)||(24072226-24072274)
chr5 (46-94)||(39024259-39024306)
[»] chr6 (5 HSPs)
chr6 (16-228)||(32935126-32935337)
chr6 (137-220)||(20701710-20701793)
chr6 (15-95)||(20701583-20701664)
chr6 (46-154)||(21266263-21266369)
chr6 (43-119)||(33968443-33968518)
[»] chr4 (8 HSPs)
chr4 (46-150)||(12296322-12296426)
chr4 (79-223)||(19673188-19673332)
chr4 (81-223)||(19815071-19815213)
chr4 (15-102)||(48098546-48098632)
chr4 (134-220)||(49528163-49528249)
chr4 (15-102)||(22810943-22811029)
chr4 (46-91)||(46487477-46487522)
chr4 (15-102)||(49747739-49747826)
[»] chr3 (7 HSPs)
chr3 (77-220)||(39021122-39021267)
chr3 (15-246)||(823219-823450)
chr3 (15-95)||(14194152-14194229)
chr3 (43-102)||(14879648-14879708)
chr3 (134-220)||(25647777-25647863)
chr3 (70-115)||(23328188-23328233)
chr3 (15-95)||(25647905-25647982)
[»] scaffold1613 (1 HSPs)
scaffold1613 (12-91)||(814-892)
[»] chr8 (3 HSPs)
chr8 (55-136)||(17720545-17720626)
chr8 (134-220)||(17656906-17656992)
chr8 (15-95)||(10248349-10248430)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 23983502 - 23983290
Alignment:
Q  16 caccacctaaaacagacttaatcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaat 115  Q
    |||||||||||||||||| | ||||| |||| ||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  23983502 caccacctaaaacagactcattcacgaaaacaaccactgaaaaacgatatacataactacccatcatcactactcaccccaaaagaagaccgctctaaat 23983403  T
Q  116 gaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccga 215  Q
    |||||||||| ||||||||| ||||| ||||||| ||||||||| ||||||||||||| |||||||  || |||||||||||||||||||||||||||||    
T  23983402 gaaattctcggtcctcatcatcaaagctgaaccagatccgaaaagctcatattcgaaagatcattcaactgtcaccacctctcaacctccgatacaccga 23983303  T
Q  216 aagaacacaaaaa 228  Q
    |||||||||||||    
T  23983302 aagaacacaaaaa 23983290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 36449376 - 36449287
Alignment:
Q  12 acatcaccacctaaaacagacttaatcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 102  Q
    |||||||||||||||| |||||   ||||| |||| ||| |||||||||||||| ||||||||| ||||||||||||||||| | ||||||    
T  36449376 acatcaccacctaaaatagactacttcacg-aaacaaccgctgaaaaacgatatccataaccactcatcgtcactactcaccacaaaagaa 36449287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 9107410 - 9107308
Alignment:
Q  47 gaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaa 146  Q
    ||||| || |||||||||| ||||||||||||||| ||||||||| ||| ||| ||  || ||||||||||||  | | ||||||||||||||||||||     
T  9107410 gaccattggaaaacgatatccataaccacccatcgccactactcatcccaaaataactcccctctaaatgaaacac-ccatcctcatcaccaaagttgag 9107312  T
Q  147 ccac 150  Q
    ||||    
T  9107311 ccac 9107308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 36449207 - 36449164
Alignment:
Q  188 caccacctctcaacctccgatacaccgaaagaacacaaaaataa 231  Q
    ||||||||||||||||||||| ||||||||||| || |||||||    
T  36449207 caccacctctcaacctccgatccaccgaaagaaaaccaaaataa 36449164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 8745330 - 8745244
Alignment:
Q  134 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 220  Q
    |||||||| ||| ||||||||||||| ||| |||  |||| ||||| | |||  ||| ||||||| ||||||||| |||||||||||    
T  8745330 caccaaagctgagccacatccgaaaagctcctatctgaaagatcatgcagcttccacaacctctcgacctccgatccaccgaaagaa 8745244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 22567909 - 22567970
Alignment:
Q  12 acatcaccacctaaaacagacttaatcacgtaaacgaccactgaaaaacgatatacataacca 74  Q
    ||||||||||||||||||||||   ||||| |||| |||||||||||||| ||| ||||||||    
T  22567909 acatcaccacctaaaacagactctttcacg-aaacaaccactgaaaaacggtatccataacca 22567970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 223
Target Start/End: Complemental strand, 3478607 - 3478440
Alignment:
Q  55 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatcc 154  Q
    |||| |||||| ||| |||| || ||||||||||||||||| |||||| ||  ||| |||| ||| || |  |||||| |||||||| | | |||  ||     
T  3478607 aaaagcgatatccatcaccaaccgtcgtcactactcacccc-aaagaacactcctcaaaattaaactcccagtcctcaacaccaaagcttagccaactca 3478509  T
Q  155 gaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacac 223  Q
    |||||  ||| || ||||| ||||||| |||  | ||||||||| | ||||||| ||||||||||||||    
T  3478508 gaaaagttcacatccgaaagatcattcagcttccgccacctctcgatctccgatccaccgaaagaacac 3478440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 9427935 - 9428007
Alignment:
Q  48 accactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaat 120  Q
    |||||| ||||| ||||| ||||||||||| ||||||||||||| ||| ||| |  | | |||||||||||||    
T  9427935 accactaaaaaatgatatccataaccacccgtcgtcactactcatccctaaatagcatccctctaaatgaaat 9428007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 28534308 - 28534355
Alignment:
Q  12 acatcaccacctaaaacagacttaatcacgtaaacgaccactgaaaaac 60  Q
    ||||||||||||||||||||||   ||||| ||||||||||||||||||    
T  28534308 acatcaccacctaaaacagactctttcacg-aaacgaccactgaaaaac 28534355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 228
Target Start/End: Original strand, 16952207 - 16952380
Alignment:
Q  55 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatcc 154  Q
    ||||| ||||| ||| ||||| ||||||||||||||||||| |||||| ||| |||||||||||| || |  |||||| |||||||||||| ||||||||    
T  16952207 aaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatcc 16952306  T
Q  155 gaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaa 228  Q
    ||||| ||| ||| ||||| ||| ||  |||  ||||||||||||||||||||| |||||||||||||| ||||    
T  16952307 gaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaa 16952380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 228
Target Start/End: Original strand, 17022872 - 17023045
Alignment:
Q  55 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatcc 154  Q
    ||||| ||||| ||| ||||| ||||||||||||||||||| |||||| ||| |||||||||||| || |  |||||| |||||||||||| ||||||||    
T  17022872 aaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatcc 17022971  T
Q  155 gaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaa 228  Q
    ||||| ||| ||| ||||| ||| ||  |||  ||||||||||||||||||||| |||||||||||||| ||||    
T  17022972 gaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaa 17023045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 228
Target Start/End: Original strand, 17060178 - 17060351
Alignment:
Q  55 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatcc 154  Q
    ||||| ||||| ||| ||||| ||||||||||||||||||| |||||| ||| |||||||||||| || |  |||||| |||||||||||| ||||||||    
T  17060178 aaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatcc 17060277  T
Q  155 gaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaa 228  Q
    ||||| ||| ||| ||||| ||| ||  |||  ||||||||||||||||||||| |||||||||||||| ||||    
T  17060278 gaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaa 17060351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 10173368 - 10173593
Alignment:
Q  21 cctaaaacagacttaatcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 119  Q
    |||||||||||| |  ||| | ||||||| |||| ||||||||||||||  ||||| ||||||||||||||||||| |||||| ||  ||| |||| |||    
T  10173368 cctaaaacagacgtcttcatgaaaacgactactgtaaaaacgatatacaacaccactcatcgtcactactcacccc-aaagaatactcctcaaaattaaa 10173466  T
Q  120 ttctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaaga 219  Q
     ||||  |||||| |||||||| ||| ||||||||||||| ||||||||| ||| |||||||  ||  ||||||||||| ||||||||| ||||||||||    
T  10173467 ctctcagtcctcaacaccaaagctgagccacatccgaaaagctcatattcaaaagatcattcaacttccaccacctctcgacctccgattcaccgaaaga 10173566  T
Q  220 acacaaaaataaccccaacaccaaact 246  Q
    |||| || | || ||||| ||||||||    
T  10173567 acaccaacaaaagcccaaaaccaaact 10173593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 20572346 - 20572226
Alignment:
Q  38 cacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcacc 137  Q
    |||| ||||||||||||||||||||||| |||||||||| |||| ||||||||||| | |||||| ||| |||||||||||| ||||  ||||||||||     
T  20572346 cacgaaaacgaccactgaaaaacgatatccataaccacc-atcgccactactcacctcaaaagaacacccctctaaatgaaactctcattcctcatcact 20572248  T
Q  138 aaagttgaaccacatccgaaaa 159  Q
    |||| | ||||| |||||||||    
T  20572247 aaagctaaaccatatccgaaaa 20572226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 34230378 - 34230292
Alignment:
Q  134 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 220  Q
    |||||||||||| ||||||| ||||| ||| |||| |||| ||||||| |||  ||||||||||||||||||||| |||||||||||    
T  34230378 caccaaagttgagccacatctgaaaagctcttatttgaaagatcattcagcttccaccacctctcaacctccgatccaccgaaagaa 34230292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 27879932 - 27880011
Alignment:
Q  12 acatcaccacctaaaacagacttaatcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 91  Q
    ||||||||||||||||||||||   ||| | |||||||| ||||||||||| || ||||||||| ||||  |||||||||    
T  27879932 acatcaccacctaaaacagactccttcaggaaaacgacctctgaaaaacgaaatccataaccactcatcaccactactca 27880011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 12343116 - 12343037
Alignment:
Q  15 tcaccacctaaaacagacttaatcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 95  Q
    |||||||||||||||||||   ||||| |||||||| ||| ||||||||||| ||  ||||| |||||||||||||||||||    
T  12343116 tcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatcca--accactcatcgtcactactcacccc 12343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 4975042 - 4974992
Alignment:
Q  16 caccacctaaaacagacttaatcacgtaaacgaccactg-aaaaacgatat 65  Q
    |||||||||||||||||||  ||||| |||||||||||| |||||||||||    
T  4975042 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatat 4974992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 4992950 - 4992900
Alignment:
Q  16 caccacctaaaacagacttaatcacgtaaacgaccactg-aaaaacgatat 65  Q
    |||||||||||||||||||  ||||| |||||||||||| |||||||||||    
T  4992950 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatat 4992900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 7696139 - 7696053
Alignment:
Q  134 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 220  Q
    |||||||||||| ||||||||  ||| ||| ||| ||||| ||||||| |||  ||||||||| | |||| |||| |||||||||||    
T  7696139 caccaaagttgagccacatcctcaaatctcctatccgaaagatcattcagcttccaccacctcccgaccttcgatccaccgaaagaa 7696053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 13699083 - 13699144
Alignment:
Q  12 acatcaccacctaaaacagacttaatcacgtaaacgaccactgaaaaacgatatacataacca 74  Q
    |||||||||||||||||| |||   | ||| ||||||||||||||||||| ||||||||||||    
T  13699083 acatcaccacctaaaacacactcttttacg-aaacgaccactgaaaaacggtatacataacca 13699144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 41086715 - 41086785
Alignment:
Q  148 cacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaag 218  Q
    ||||||| |||| ||| ||| ||||| ||||||| |||  ||||||||||| ||||||||| |||||||||    
T  41086715 cacatccaaaaagctcttatccgaaagatcattcagcttccaccacctctcgacctccgatccaccgaaag 41086785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 22884931 - 22884991
Alignment:
Q  12 acatcaccacctaaaacagacttaatcacgtaaacgaccactgaaaaacgatatacataacc 73  Q
    ||||||||||||||||||||||   ||||| ||||||||||||| |||||| || |||||||    
T  22884931 acatcaccacctaaaacagactccttcacg-aaacgaccactgacaaacgaaatccataacc 22884991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 27740229 - 27740153
Alignment:
Q  43 aaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 119  Q
    |||| ||||||||| |||||||| ||||||||| | ||| ||||||||| |||  || || ||| ||||||||||||    
T  27740229 aaactaccactgaagaacgatattcataaccactcgtcgccactactcatcccagaataacacccctctaaatgaaa 27740153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 16577561 - 16577344
Alignment:
Q  12 acatcaccacctaaaacagacttaatcacgtaaacgaccactgaaaaac-gatatacataaccacccatcgtcactactcaccccgaaagaagaccgctc 110  Q
    |||||| |||||||||||||||   ||||| ||||||||||| |||||  ||||| ||||||||  ||||||| |||||||| || |||||| ||| |||    
T  16577561 acatcatcacctaaaacagactctttcacgaaaacgaccactcaaaaaatgatatccataaccattcatcgtccctactcactccaaaagaacacccctc 16577462  T
Q  111 taaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatac 210  Q
    |||| |||| | ||  ||  ||||||||||||||| ||||||||||||| ||| ||||| ||| ||||||| |||  |||||||||||||||||| ||      
T  16577461 taaaagaaactttcagtcaccatcaccaaagttgagccacatccgaaaagctcctattccaaagatcattcagcttccaccacctctcaacctccaatct 16577362  T
Q  211 accgaaagaacacaaaaa 228  Q
    ||||||||||| ||||||    
T  16577361 accgaaagaacgcaaaaa 16577344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 41126271 - 41126462
Alignment:
Q  14 atcaccacctaaaacagacttaatcacgtaaacga-ccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctcta 112  Q
    |||||||||||||||||||  | ||||| |||| | |||||| |||||||||| ||| ||||||||||||||||||||||||             |||||    
T  41126271 atcaccacctaaaacagacgcattcacgaaaacaaaccactgtaaaacgatatccatcaccacccatcgtcactactcaccc-------------ctcta 41126357  T
Q  113 aatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacac 212  Q
    ||||||| ||||  ||||||||||||||||||| ||||||| ||||| ||| ||| | ||| ||| ||| |||  || ||||||||||||||| || |||    
T  41126358 aatgaaactctcagtcctcatcaccaaagttgatccacatctgaaaagctcctatccaaaagatcgttcagcttccagcacctctcaacctccaatccac 41126457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 38548856 - 38548934
Alignment:
Q  12 acatcaccacctaaaacagacttaatcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 91  Q
    ||||||||||||||||||||||   ||||| |||||| |||||||||||||||| |||||||||||||||||||||||||    
T  38548856 acatcaccacctaaaacagactctttcacg-aaacgatcactgaaaaacgatattcataaccacccatcgtcactactca 38548934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 16149073 - 16148987
Alignment:
Q  15 tcaccacctaaaacagacttaatcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaaga 101  Q
    ||||||||||||||||||    ||| ||||||||| ||||||||||||||| || || ||||||||||||||||||||||| |||||    
T  16149073 tcaccacctaaaacagacaccttcatgtaaacgactactgaaaaacgatatccaaaagcacccatcgtcactactcacccccaaaga 16148987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 16147735 - 16147649
Alignment:
Q  134 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 220  Q
    |||||||| ||| ||||||||||||| |||||||  |||| |||||||  || |||||||||||| |||||||||  ||||||||||    
T  16147735 caccaaagctgagccacatccgaaaagctcatatctgaaagatcattcaactttcaccacctctccacctccgatctaccgaaagaa 16147649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 38544535 - 38544613
Alignment:
Q  12 acatcaccacctaaaacagacttaatcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 91  Q
    ||||||||||||||||||||||   ||||| ||  || ||||| |||||||||| ||||||||| |||||||||||||||    
T  38544535 acatcaccacctaaaacagactctttcacggaat-gatcactggaaaacgatatccataaccactcatcgtcactactca 38544613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 32882668 - 32882584
Alignment:
Q  12 acatcaccacctaaaacagacttaatcacgtaaacgaccactgaaaa-acgatatacataaccacccatcgtcactactcacccc 95  Q
    |||||||| |||||||| ||||   ||||| |||||| ||||| ||| ||||||| ||  |||||||||||||||||||||||||    
T  32882668 acatcaccgcctaaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacaccacccatcgtcactactcacccc 32882584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 6583120 - 6583206
Alignment:
Q  134 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 220  Q
    |||||||| ||| || |||||||||| ||| |||  |||| |||| || |||  ||||||||||| ||||||||| |||||||||||    
T  6583120 caccaaagctgagccgcatccgaaaagctcctatctgaaagatcaatcagcttccaccacctctcgacctccgattcaccgaaagaa 6583206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 31290923 - 31291009
Alignment:
Q  134 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 220  Q
    |||||||| ||| ||||||||||||| ||| ||| ||||| ||||  |  ||  ||||||||||| ||||||||| |||||||||||    
T  31290923 caccaaagctgagccacatccgaaaagctcctatccgaaagatcaagcaacttccaccacctctcgacctccgatccaccgaaagaa 31291009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 95
Target Start/End: Complemental strand, 24659174 - 24659146
Alignment:
Q  67 cataaccacccatcgtcactactcacccc 95  Q
    |||||||||||||||||||||||||||||    
T  24659174 cataaccacccatcgtcactactcacccc 24659146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 49820387 - 49820311
Alignment:
Q  43 aaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 119  Q
    |||||| |||||||||||||||| ||||||||||| ||| ||| || || ||| ||| |  ||| ||||||||||||    
T  49820387 aaacgagcactgaaaaacgatatccataaccacccgtcgccaccacacatcccaaaatatcacccctctaaatgaaa 49820311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 43 - 237
Target Start/End: Original strand, 17853881 - 17854073
Alignment:
Q  43 aaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagt 142  Q
    |||||| |||||||||||||||| ||||||||||||||  ||||||||||||| |||| ||||  ||||||||||||  | | ||||||||||||| ||     
T  17853881 aaacgatcactgaaaaacgatatccataaccacccatcaccactactcaccccaaaagtagacacctctaaatgaaacac-caatcctcatcaccatagc 17853979  T
Q  143 tgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaataaccccaa 237  Q
    ||| |||||||||||||  |||||||| ||| |||||||  ||  |||||||||||||| || | | |||||||||||||  ||||||| |||||    
T  17853980 tgagccacatccgaaaa-gtcatattctaaagatcattcaacttccaccacctctcaacttcaggtccaccgaaagaacattaaaataagcccaa 17854073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 167
Target Start/End: Original strand, 26045746 - 26045901
Alignment:
Q  15 tcaccacctaaaacagacttaatcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccga--aagaagaccgctct 111  Q
    ||||||||||||||||||||  ||| | ||| |||||| | |||||||| || ||  ||| ||||||||||||||||||||| |  || || ||| |||     
T  26045746 tcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtcactactcaccccaaagaaaaacacccctca 26045845  T
Q  112 aaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatat 167  Q
    |||| ||| |||| ||||| | ||||||||||||  ||| |||||||| |||||||    
T  26045846 aaattaaactctcaatcctaaacaccaaagttgagtcacctccgaaaagctcatat 26045901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 39183985 - 39184044
Alignment:
Q  14 atcaccacctaaaacagacttaatcacgtaaacgaccactgaaaaacgatatacataacca 74  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||||| ||| ||||||||    
T  39183985 atcaccacctaaaacagactctatcacg-aaacgaccactgaaaaacggtatccataacca 39184044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 33258665 - 33258750
Alignment:
Q  18 ccacctaaaacagacttaatcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 102  Q
    ||||||||||||||  |  ||||| || ||||||||| ||||||||||| ||  |||| |||||| ||||||||||||| ||||||    
T  33258665 ccacctaaaacagatctcttcacgaaagcgaccactgtaaaaacgatatccaataccatccatcgccactactcacccctaaagaa 33258750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 24072094 - 24072142
Alignment:
Q  43 aaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 91  Q
    ||||||||||| |||||||||||  || | |||||||||||||||||||    
T  24072094 aaacgaccactaaaaaacgatatctatgatcacccatcgtcactactca 24072142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 24072226 - 24072274
Alignment:
Q  189 accacctctcaacctccgatacaccgaaagaacacaaaaataaccccaa 237  Q
    ||||||| |||||||||| | |||||||||||||| |||| ||||||||    
T  24072226 accacctttcaacctccggtccaccgaaagaacaccaaaaaaaccccaa 24072274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 39024259 - 39024306
Alignment:
Q  46 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccc 94  Q
    |||||| ||||||||||||| ||||| ||| ||||||||||||||||||    
T  39024259 cgaccattgaaaaacgatatccataa-cactcatcgtcactactcaccc 39024306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 32935126 - 32935337
Alignment:
Q  16 caccacctaaaacagacttaatcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaat 115  Q
    |||||||||||| |||||   | ||| ||||| || || |||||||||||||||||||||||||| |||||||| ||||| ||| || | | ||||||||    
T  32935126 caccacctaaaatagactccttaacgaaaacgccccctcaaaaacgatatacataaccacccatcatcactactgacccc-aaaaaacatccctctaaat 32935224  T
Q  116 gaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccga 215  Q
    |||| || |  | ||||||||||||| |||   ||||||||||| ||||| ||||||| ||||| | |||  ||||||||| ||||||  ||  ||||||    
T  32935225 gaaactcacagtgctcatcaccaaagctgagttacatccgaaaaactcatgttcgaaagatcatgcagcttccaccacctcccaacctttgaaccaccga 32935324  T
Q  216 aagaacacaaaaa 228  Q
    |||||||| ||||    
T  32935325 aagaacactaaaa 32935337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 20701710 - 20701793
Alignment:
Q  137 caaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 220  Q
    ||||||||| |||||| |||||| ||| ||| ||||| ||||||| |||  ||| ||||||| ||||||||| |||||||||||    
T  20701710 caaagttgagccacattcgaaaagctcctatccgaaagatcattcagcttccactacctctcgacctccgatccaccgaaagaa 20701793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 20701583 - 20701664
Alignment:
Q  15 tcaccacctaaaacagacttaatcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 95  Q
    |||||||||| |||||||  | ||||| || | ||||||| ||||||||||| ||  || ||||||||||||||||||||||    
T  20701583 tcaccacctataacagacccattcacgaaagcaaccactgtaaaaacgatatccaatactacccatcgtcactactcacccc 20701664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 21266369 - 21266263
Alignment:
Q  46 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttga 145  Q
    ||||||||||||||||| || || ||| ||| |||||||||||||||||| || ||| |||| | |||| ||||  ||| ||||||| |||||||  |||    
T  21266369 cgaccactgaaaaacgacatccagaacaacc-atcgtcactactcaccccaaaggaacaccgttgtaaaagaaa-actcaatcctcaacaccaaaactga 21266272  T
Q  146 accacatcc 154  Q
     ||||||||    
T  21266271 gccacatcc 21266263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 33968443 - 33968518
Alignment:
Q  43 aaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 119  Q
    ||||||||||||||||| | ||| ||||||||  |||| |||||||||| ||| ||| || ||| ||||||||||||    
T  33968443 aaacgaccactgaaaaatggtatccataacca-gcatcatcactactcatcccaaaataacacccctctaaatgaaa 33968518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 12296426 - 12296322
Alignment:
Q  46 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttga 145  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||| || ||| ||||||||||||  |||  ||||||||||| |||||||    
T  12296426 cgaccactgaaaaacgatatccataaccacccatcgccactactcatcccaaaataacacccctctaaatgaaacactccgtcctcatcacctaagttga 12296327  T
Q  146 accac 150  Q
     ||||    
T  12296326 gccac 12296322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 19673332 - 19673188
Alignment:
Q  79 tcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatca 178  Q
    ||||||||||||||||| |||||| ||  ||| |||| ||| ||||  |||||| |||||||||| | |||||||||||||  |||||| | ||||||||    
T  19673332 tcgtcactactcacccccaaagaacactcctcaaaattaaactctcagtcctcaacaccaaagtttagccacatccgaaaagttcatatccaaaatatca 19673233  T
Q  179 ttccgctatcaccacctctcaacctccgatacaccgaaagaacac 223  Q
    ||  |||  ||||| || || |||  |||| ||||||||||||||    
T  19673232 tttagcttccaccatctatcgaccgtcgatccaccgaaagaacac 19673188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 19815071 - 19815213
Alignment:
Q  81 gtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcatt 180  Q
    ||||||||||||||| |||||| ||  ||| | || ||| ||||  |||||| |||||||||| | ||||||| |||||  || ||| ||||| ||||||    
T  19815071 gtcactactcacccccaaagaacacttctcaagattaaactctcagtcctcaacaccaaagtttagccacatcggaaaagttcctatccgaaagatcatt 19815170  T
Q  181 ccgctatcaccacctctcaacctccgatacaccgaaagaacac 223  Q
      |||  ||||| ||||| ||||||| | ||||||||||||||    
T  19815171 tagcttccaccatctctcgacctccggtccaccgaaagaacac 19815213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 48098632 - 48098546
Alignment:
Q  15 tcaccacctaaaacagacttaatcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 102  Q
    |||||||||||||||  |||  ||||  |||||||||||| ||||||||||| ||| || |||| ||||||||||||||||| ||||||    
T  48098632 tcaccacctaaaacactctt--tcacaaaaacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccccaaagaa 48098546  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 49528249 - 49528163
Alignment:
Q  134 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 220  Q
    |||||||| ||||||||||||| ||| ||  ||| ||||| |||||||  ||  ||||||||| | ||||||||| |||||||||||    
T  49528249 caccaaagctgaaccacatccgcaaagcttctatccgaaagatcattcatcttccaccacctcccgacctccgatccaccgaaagaa 49528163  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 22810943 - 22811029
Alignment:
Q  15 tcaccacctaaaacagacttaatcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 102  Q
    ||||| |||||||||||||   ||||| || ||||||||| ||||||||||| |   |||| |||||||||||||||||||| ||||||    
T  22810943 tcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcct--accatccatcgtcactactcacccccaaagaa 22811029  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 46487522 - 46487477
Alignment:
Q  46 cgaccactgaaaaacgatatacataaccacccatcgtcactactca 91  Q
    |||||||||||||||||||| |||||||||  |||| |||||||||    
T  46487522 cgaccactgaaaaacgatattcataaccacatatcgccactactca 46487477  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 49747826 - 49747739
Alignment:
Q  15 tcaccacctaaaacagacttaatcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 102  Q
    |||||||||||||||||||   ||||| ||||||||| || |||||||| || ||  ||| ||||| ||||||||||||||| ||||||    
T  49747826 tcaccacctaaaacagactctttcacgaaaacgaccattgtaaaaacga-atccaacaccgcccattgtcactactcacccctaaagaa 49747739  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 39021122 - 39021267
Alignment:
Q  77 catcgtcactactcaccccgaaagaagaccgc-tctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcg-aaat 174  Q
    |||||||||||||||| || ||||||   ||| || |||||||| ||||  |||||| |||||||| | | ||||||||||||| ||||||| || |||     
T  39021122 catcgtcactactcacacccaaagaaacacgcgtcaaaatgaaactctcagtcctcaacaccaaagctaagccacatccgaaaaactcatatccgaaaag 39021221  T
Q  175 atcattccgctatcaccacctctcaacctccgatacaccgaaagaa 220  Q
    |||| || |||| ||||| ||||| ||||||||| |||| ||||||    
T  39021222 atcaatcagctaccaccatctctcgacctccgatccaccaaaagaa 39021267  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 823219 - 823450
Alignment:
Q  15 tcaccacctaaaacagacttaatcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaag-aagaccgctctaa 113  Q
    ||||||||||||||| |||  |||||  |||| |||||||||||||||||| ||||||||||| ||| | ||||||||||  |||| || ||| ||||||    
T  823219 tcaccacctaaaacaaactccatcaca-aaacaaccactgaaaaacgatatccataaccacccttcgcctctactcaccctaaaagaaacacctctctaa 823317  T
Q  114 atgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacacc 213  Q
     | |||  |    |||| || |||| | |||| ||||||| |||||  || ||||  ||| ||||||| |||  | ||||||||||||||| | |  |||    
T  823318 ttcaaacaccatgtccttattaccataattgagccacatctgaaaatgtcctattgaaaagatcattcagcttccgccacctctcaacctctggtctacc 823417  T
Q  214 gaaagaacacaaaaataaccccaacaccaaact 246  Q
    |||||||||| ||||||| ||||| || |||||    
T  823418 gaaagaacaccaaaataagcccaaaacaaaact 823450  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 14194229 - 14194152
Alignment:
Q  15 tcaccacctaaaacagacttaatcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcacccc 95  Q
    |||||||||||||||||||  |||||| || || |||||||| |||||||| ||  |||| ||||||||||||||||||||    
T  14194229 tcaccacctaaaacagactccatcacgaaatcg-ccactgaataacgatatcca--accatccatcgtcactactcacccc 14194152  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 14879708 - 14879648
Alignment:
Q  43 aaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactcaccccgaaagaa 102  Q
    ||||||||||||||||| |||||| ||  ||||| ||||||||||| ||||||||||||||    
T  14879708 aaacgaccactgaaaaaacgatatccaacaccacacatcgtcactattcaccccgaaagaa 14879648  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 25647863 - 25647777
Alignment:
Q  134 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 220  Q
    |||||||  ||| |||| |||||||| ||||||  ||||| |||||||  || |||||||||||| ||||||||| |||| ||||||    
T  25647863 caccaaaactgagccacgtccgaaaagctcataaccgaaagatcattcaactttcaccacctctcgacctccgatccaccaaaagaa 25647777  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 23328188 - 23328233
Alignment:
Q  70 aaccacccatcgtcactactcaccccgaaagaagaccgctctaaat 115  Q
    |||||||||||||||||||||||||| |||||| ||| ||| ||||    
T  23328188 aaccacccatcgtcactactcacccccaaagaacaccactcaaaat 23328233  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 25647982 - 25647905
Alignment:
Q  15 tcaccacctaaaacagacttaatcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcacccc 95  Q
    ||||||| ||||||| |||  |||||| |||| |||||||||||||||||| |  ||||| ||||| ||||||||||||||    
T  25647982 tcaccacataaaacatactccatcacg-aaaccaccactgaaaaacgatatcc--aaccatccatcatcactactcacccc 25647905  T

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Target: scaffold1613 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 814 - 892
Alignment:
Q  12 acatcaccacctaaaacagacttaatcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 91  Q
    ||||||||||||||||||||||   ||||| ||  || ||||| |||||||||| ||||||||| |||||||||||||||    
T  814 acatcaccacctaaaacagactctttcacggaat-gatcactggaaaacgatatccataaccactcatcgtcactactca 892  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 17720545 - 17720626
Alignment:
Q  55 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcac 136  Q
    ||||| |||||||||||||||  |||||||||||||||||| |||  | ||| ||||||||||||  |||  ||||||||||    
T  17720545 aaaaaagatatacataaccacatatcgtcactactcaccccaaaaataaacccctctaaatgaaacactccgtcctcatcac 17720626  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 17656906 - 17656992
Alignment:
Q  134 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 220  Q
    |||||||||||| |||| || ||||| ||| |||  |||| ||||||| |||  |||||||| || ||||||||| |||||||||||    
T  17656906 caccaaagttgagccacctctgaaaagctcctatatgaaagatcattcagcttccaccacctatcgacctccgatccaccgaaagaa 17656992  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 10248349 - 10248430
Alignment:
Q  15 tcaccacctaaaacagacttaatcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 95  Q
    ||||||||||||||| |||   ||||| |||||||||||| |||||||| || |   | |||||||||||||||||||||||    
T  10248349 tcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactcacccc 10248430  T

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