View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_315 (Length: 249)
Name: NF10855A_low_315
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_315 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 31742030 - 31741802
Alignment:
| Q |
21 |
tcatgttcttctcaaagttgtgttgtttgcgccttcagcttactttcaggttcgccatcccagctatcaattttggaaaatcagtcgcgtcctgatttaa |
120 |
Q |
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| T |
31742030 |
tcatgttcttctcaaagttgtgttgtttgcgccttcagtttacttccaggttcgccatcccagctatcaattttggaaaatcagacgcgtcctgatttaa |
31741931 |
T |
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| Q |
121 |
acttgtttaagctcttcacagctttatacctatacttcctctctatctctatctttcttgtttgcttgatcgcgcaatagaattgtggtgtgtgttctat |
220 |
Q |
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| T |
31741930 |
acttgtctaagctcttcacagctttatacctatacttcctctctatctctatctttcttgtttgcttgctcgagcaatagaattgtggtgtgtgttctat |
31741831 |
T |
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| Q |
221 |
ctcgactcatgaagtagatatattctgat |
249 |
Q |
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| T |
31741830 |
ctcgactcatgaagtaaatatattctgat |
31741802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 31734883 - 31734816
Alignment:
| Q |
163 |
ctatctctatctttcttgtttgcttgatcgcgcaatagaattgtggtgtgtgttctatctcgactcat |
230 |
Q |
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| T |
31734883 |
ctatctataactttcttatttgcttgcgcgagctatagaattgtggtgtgtgttccatctcgactcat |
31734816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 31747039 - 31746970
Alignment:
| Q |
161 |
ctctatctctatctttcttgtttgcttgatcgcgcaatagaattgtggtgtgtgttctatctcgactcat |
230 |
Q |
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| T |
31747039 |
ctctatctctatctttcttatttaattgcttgagcaatagaattgtggtttgtgttccatctcgattcat |
31746970 |
T |
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