View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_319 (Length: 248)

Name: NF10855A_low_319
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_319
NF10855A_low_319
[»] chr7 (2 HSPs)
chr7 (163-243)||(6703330-6703410)
chr7 (12-73)||(6703178-6703239)
[»] chr2 (1 HSPs)
chr2 (185-225)||(8731061-8731101)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 6703330 - 6703410
Alignment:
Q  163 gttattcatcattatagtcgattttctaggacattttatcaagaatattatgatagagtacctagtgttatattgttggag 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6703330 gttattcatcattatagtcgattttctaggacattttatcaagaatattatgatagagtacctagtgttatatggttggag 6703410  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 6703178 - 6703239
Alignment:
Q  12 atggacatccgaatttgtgtttatgccattgatcatattaatttggtatgatattcttccaa 73  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6703178 atggacatcagaatttgtgtttatgccattgatcatattaatttggtatgatattcttccaa 6703239  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 8731061 - 8731101
Alignment:
Q  185 tttctaggacattttatcaagaatattatgatagagtacct 225  Q
    ||||||||| ||||||||||||||||  |||||||||||||    
T  8731061 tttctaggaaattttatcaagaatatcttgatagagtacct 8731101  T

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