View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_320 (Length: 248)
Name: NF10855A_low_320
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_320 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 46238734 - 46238494
Alignment:
| Q |
1 |
acataacaaggtcacatcaattaaaaaccctaaaaaagtcacaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaaca |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238734 |
acataacaagttcacatcaattaaaaaccctaaaaaattcacaacatctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaaca |
46238635 |
T |
|
| Q |
101 |
aagaaatagcatgcatattcataggagtaaagggaggaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcat |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238634 |
aagaaatagcatgcatattcataggagtaaacagaggaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcat |
46238535 |
T |
|
| Q |
201 |
aaccgtcgattgtccttcgatcgtttcatgcatattcttcg |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46238534 |
aaccgtcgattgtccttcgatcgtttcatgcatcttcttcg |
46238494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 3455924 - 3456164
Alignment:
| Q |
1 |
acataacaaggtcacatcaattaaaaaccctaaaaaagtcacaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaaca |
100 |
Q |
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|||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455924 |
acataacaagttcacatcaatttaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaaca |
3456023 |
T |
|
| Q |
101 |
aagaaatagcatgcatattcataggagtaaagggaggaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcat |
200 |
Q |
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|||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3456024 |
aagaaatagcatgcatattcttaggagtaaacagaagaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcat |
3456123 |
T |
|
| Q |
201 |
aaccgtcgattgtccttcgatcgtttcatgcatattcttcg |
241 |
Q |
| |
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|||||||||||| |||||||| ||||| ||||| ||||||| |
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| T |
3456124 |
aaccgtcgattgcccttcgattgtttcctgcatcttcttcg |
3456164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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