View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_322 (Length: 248)
Name: NF10855A_low_322
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_322 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 8074965 - 8074723
Alignment:
| Q |
1 |
tcaatggaggacctcacaatctttgagactccattatgggatttaattctacaaaatccgactcattccaagctattcaatgatgctatggaaagtgatt |
100 |
Q |
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| T |
8074965 |
tcaatggaggacctcacaatctttgagactccattatgggatttaattttacaaaatccgactcattccaagttattcaatgatgctatggaaagtgatt |
8074866 |
T |
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| Q |
101 |
ctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtggaaccggtaacactgttaaaat |
200 |
Q |
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| T |
8074865 |
ctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttcgttggttgatgttggaggtggaaccggaaacactgttaaaat |
8074766 |
T |
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| Q |
201 |
tatttgtgaggcgtttcctacgttaaaatgtatattgttcgac |
243 |
Q |
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| T |
8074765 |
tatttgtgaggcgtttcctacgttaaaatgtatagtgttcgac |
8074723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 8066525 - 8066288
Alignment:
| Q |
6 |
ggaggacctcacaatctttgagactccattatgggatttaattctacaaaatccgactcattccaagctattcaatgatgctatggaaagtgattctaat |
105 |
Q |
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| T |
8066525 |
ggaggatctcacaatcttcgatactacattatgggatttcatgcaacaaaattcggcttacgcggagttattcaatgatgctatggagagtgactctaat |
8066426 |
T |
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| Q |
106 |
atggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtggaaccggtaacactgttaaaattattt |
205 |
Q |
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| T |
8066425 |
atgatgaggtttgcaatgagtgattgcaaatcagtttttgagggcataacttctttggttgatgttggaggtggaaccggaaacacggttaaaattattt |
8066326 |
T |
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| Q |
206 |
gtgaggcgtttcctacgttaaaatgtatattgttcgac |
243 |
Q |
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| T |
8066325 |
ctgaggcgtttcctacgttaaaatgtatagtgttcgac |
8066288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 34951456 - 34951317
Alignment:
| Q |
79 |
aatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtg |
178 |
Q |
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| T |
34951456 |
aatgatgctatggaaagtgattctcatgttgtgaggttggctttgagagattgtaattctgtttttgaagggattggttcattggttgatgttggtggtg |
34951357 |
T |
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| Q |
179 |
gaaccggtaacactgttaaaattatttgtgaggcgtttcc |
218 |
Q |
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| T |
34951356 |
gaactggaaacacagctaagattatttgtgaggcgtttcc |
34951317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 34946985 - 34946846
Alignment:
| Q |
79 |
aatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtg |
178 |
Q |
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| T |
34946985 |
aatgatgctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttcaagggattggttcattggttgatgttggtggtg |
34946886 |
T |
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| Q |
179 |
gaaccggtaacactgttaaaattatttgtgaggcgtttcc |
218 |
Q |
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| T |
34946885 |
gaactggaaacacagctaagattatatgtgaggcgtttcc |
34946846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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