View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_323 (Length: 248)
Name: NF10855A_low_323
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_323 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 55534352 - 55534117
Alignment:
| Q |
1 |
tcaggcttgctcagatgccggcgaactgcagtttcagagtacttagagatgtggtaggcaaaagatttccttcgtcaaattcagttctgatcaagtacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
55534352 |
tcaggcttgctcagatgccggcgaactgcagtttcagagtacttagagatgtggtaagcaaaagatttccttcttcaaattcagttctgatcaagtacaa |
55534253 |
T |
|
| Q |
101 |
ggattgtgatggtgatttggtcactataacatctactgatgaactcagattggctgagtcctttgtggatagcaatctgctgaaagaacttgaatcagat |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
55534252 |
ggattgtgatggtgatttggttactataacatctactgatgaactcagattggctgagtcctttgtggatagcaatctgctgaaagaactcgaatcagat |
55534153 |
T |
|
| Q |
201 |
aaaagtgattctatttcggtgctgagactacatatt |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
55534152 |
aaaagtgattctatttcggtgctgagactacatatt |
55534117 |
T |
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