View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_325 (Length: 247)

Name: NF10855A_low_325
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_325
NF10855A_low_325
[»] chr4 (3 HSPs)
chr4 (20-241)||(40115284-40115505)
chr4 (57-146)||(9007211-9007300)
chr4 (88-160)||(42360930-42361002)
[»] chr5 (1 HSPs)
chr5 (88-160)||(3017198-3017270)
[»] chr2 (1 HSPs)
chr2 (87-122)||(9038424-9038459)
[»] chr6 (1 HSPs)
chr6 (87-165)||(3703285-3703363)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 40115505 - 40115284
Alignment:
Q  20 atcacttgcaagttattgtctgtctcacatttatgcaaaactaaccttatatccattgaannnnnnnctgattattttttggtgaaggatttgaagacaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||||    
T  40115505 atcacttgcaagttattgtctgtctcacatttatgcaaaactaaccctatatccattgaatttttttctgattattttttggtgaaggatttgaagacaa 40115406  T
Q  120 gggagcctcttctaaaaggattgcataaggatggtctctaccacattccaaagccacccaccaccagcttcataacttcactcgccactaatccaccttg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40115405 gggagcctcttctaaaaggattgcataaggatggtctctaccacattccaaagccacccaccaccagcttcataacttcactcgccactactccaccttg 40115306  T
Q  220 gcatcatatttttcgacatccg 241  Q
    ||||||||||||  ||||||||    
T  40115305 gcatcatattttaggacatccg 40115284  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 9007300 - 9007211
Alignment:
Q  57 aaactaaccttatatccattgaannnnnnnctgattattttttggtgaaggatttgaagacaagggagcctcttctaaaaggattgcata 146  Q
    ||||||||| ||| |||||||||       |||||| |||||||||||||||||||||||||| ||||||||| || |||||| ||||||    
T  9007300 aaactaaccctatttccattgaatttttttctgattgttttttggtgaaggatttgaagacaaaggagcctctcctcaaaggactgcata 9007211  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 42361002 - 42360930
Alignment:
Q  88 tgattattttttggtgaaggatttgaagacaagggagcctcttctaaaaggattgcataaggatggtctctac 160  Q
    ||||||||  ||||| ||||| |||||||||||||  |||||| |||||||| ||||||||||||| ||||||    
T  42361002 tgattattacttggtaaaggacttgaagacaagggctcctcttataaaaggaatgcataaggatgggctctac 42360930  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 3017198 - 3017270
Alignment:
Q  88 tgattattttttggtgaaggatttgaagacaagggagcctcttctaaaaggattgcataaggatggtctctac 160  Q
    ||||||||  ||||| ||||| |||||||||||||  ||||||||||||||||||||||||||||| ||||||    
T  3017198 tgattattacttggtaaaggacttgaagacaagggctcctcttctaaaaggattgcataaggatgggctctac 3017270  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 9038459 - 9038424
Alignment:
Q  87 ctgattattttttggtgaaggatttgaagacaaggg 122  Q
    |||||| |||||||||||||||||||||||||||||    
T  9038459 ctgatttttttttggtgaaggatttgaagacaaggg 9038424  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 3703363 - 3703285
Alignment:
Q  87 ctgattattttttggtgaaggatttgaagacaagggagcctcttctaaaaggattgcataaggatggtctctaccacat 165  Q
    |||||| ||||||| | ||||||||||||||||||| |||  |||||| ||||  ||||||  |||| |||||||||||    
T  3703363 ctgattgttttttgattaaggatttgaagacaagggtgcccattctaagaggacggcataacaatggactctaccacat 3703285  T

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