View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_326 (Length: 247)
Name: NF10855A_low_326
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_326 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 48484166 - 48484404
Alignment:
| Q |
10 |
gatggacatcatga-cgatgattatagcacctgttacatataataatcttgttatcttcccaatcttctacccatctgcaaatcgcacatctctctgttg |
108 |
Q |
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| T |
48484166 |
gatggaaatcatgaacgatgattatagcacctgttacatataataatcttgttatcttcccaatcttctacccatctgcaaatcgcacatctctctgttg |
48484265 |
T |
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| Q |
109 |
tccattttgcataaactggttcatatttttctgaggcaataaagtaaaagtaaactaagtttctccatttcaaaaatgtatttgaaagagaacatgagac |
208 |
Q |
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| T |
48484266 |
tccattttgcataaactggttcatatttttctgaggcaataaagtaaaagtaaactaagtttctccatttcaaaaatgtatttgaaagagaacataagac |
48484365 |
T |
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| Q |
209 |
tgaaatgcaccataagacctgatcatgtacaagaaatgg |
247 |
Q |
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| T |
48484366 |
tgaaatgtaccataagacctgatcatgtacaagaaatgg |
48484404 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 10036419 - 10036323
Alignment:
| Q |
37 |
acctgttacatataataatcttgttatcttcccaatcttctacccatctgcaaatcgcacatctctctgttgtccattttgcataaactggttcata |
133 |
Q |
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| T |
10036419 |
acctgttgcagatgataattttgttatcctcatagtcttcgatccatctacaaatagcacatctttctgtcgtccattttgcatgaactggctcata |
10036323 |
T |
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