View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_329 (Length: 247)
Name: NF10855A_low_329
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_329 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 37321847 - 37321624
Alignment:
| Q |
11 |
ccaaagtagcaattctttgcataacatagtaagaagcagcactatcaagtccactagttggttcatcaagaaaaagaagtcttggacgtgttaggatctc |
110 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |
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| T |
37321847 |
ccaaagtagcaattcttttcataacatagtaagaagcagcactatcaagtccactagttggctcatcaagaaatagaagtctaggacgtgttaggatctc |
37321748 |
T |
|
| Q |
111 |
aatgcaaatgctaactctccttttttgacccccacttatgcctttcacaccccaccctccaattcttgtgttgattgcatcttgcagacccatttctttg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37321747 |
aatgcaaatgctaactctccttttttgacccccacttatgcctttcacaccccaccctccaattcttgtgttcattgcatcttgcagacccatttctttg |
37321648 |
T |
|
| Q |
211 |
attgtaatatcagctctctctttc |
234 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
37321647 |
attgtaatatcagctctctctttc |
37321624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 37330762 - 37330546
Alignment:
| Q |
18 |
agcaattctttgcataacatagtaagaagcagcactatcaagtccactagttggttcatcaagaaaaagaagtcttggacgtgttaggatctcaatgcaa |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37330762 |
agcaattcttttcataacatagtaagaagcagcactatcaagtccactagttggctcatcaagaaaaagaagtctaggacgtgttaggatctcaatgcaa |
37330663 |
T |
|
| Q |
118 |
atgctaactctccttttttgacccccacttatgcctttcacaccccaccctccaattcttgtgttgattgcatcttgcagacccatttctttgattgtaa |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37330662 |
atgctaactctccttttttgacccccacttatgcctttcacaccccaccctccaattcttgtgttcattgcatcttgcagacccatttctttgattgtaa |
37330563 |
T |
|
| Q |
218 |
tatcagctctctctttc |
234 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
37330562 |
tatcagctctctctttc |
37330546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 22 - 233
Target Start/End: Original strand, 37346847 - 37347058
Alignment:
| Q |
22 |
attctttgcataacatagtaagaagcagcactatcaagtccactagttggttcatcaagaaaaagaagtcttggacgtgttaggatctcaatgcaaatgc |
121 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||| |
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| T |
37346847 |
attcttttcataacatagtaagaagcagcactatcaagtccactagttggttcatcaagaaatagaagtcttggacgtgtaagaatctcaatggaaatgc |
37346946 |
T |
|
| Q |
122 |
taactctccttttttgacccccacttatgcctttcacaccccaccctccaattcttgtgttgattgcatcttgcagacccatttctttgattgtaatatc |
221 |
Q |
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|
|||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| ||| |
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| T |
37346947 |
taactctccttttttgacccccacttattcctttaacaccccaccctcctattcttgtgttgattgcatcttgcagacccatttctcttattgtaaaatc |
37347046 |
T |
|
| Q |
222 |
agctctctcttt |
233 |
Q |
| |
|
|||||| ||||| |
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|
| T |
37347047 |
agctctttcttt |
37347058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 19544671 - 19544894
Alignment:
| Q |
11 |
ccaaagtagcaattctttgcataacatagtaagaagcagcactatcaagtccactagttggttcatcaagaaaaagaagtcttggacgtgttaggatctc |
110 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
19544671 |
ccaaggtagcaattcttgtcataacatagtaagaagcagcactatcaagtccacttgttggttcatcaagaaaaagaagttttggacgtgtaaggatctc |
19544770 |
T |
|
| Q |
111 |
aatgcaaatgctaactctccttttttgacccccacttatgcctttcacaccccaccctccaattcttgtgttgattgcatcttgcagacccatttctttg |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||| ||||||| | ||||||||||||||||||||| || |
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|
| T |
19544771 |
aatgcaaatgctaactctccttttctgacctccacttatgcctttaacaccccatcctccaattattgtgttagtagcatcttgcagacccatttctctg |
19544870 |
T |
|
| Q |
211 |
attgtaatatcagctctctctttc |
234 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
19544871 |
attgtaaaatcagctctctctttc |
19544894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 37298433 - 37298256
Alignment:
| Q |
30 |
cataacatagtaagaagcagcactatcaagtccactagttggttcatcaagaaaaagaagtcttggacgtgttaggatctcaatgcaaatgctaactctc |
129 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| || | ||||| ||||||||||||||||| | |||| |
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|
| T |
37298433 |
cataacatagtaggaagctgcactatcaagtccactagttggttcatcaaggaaaagaagtctagggtgagttagaatctcaatgcaaatgcttagtctc |
37298334 |
T |
|
| Q |
130 |
cttttttgacccccacttatgcctttcacaccccaccctccaattcttgtgttgattgcatcttgcagacccatttct |
207 |
Q |
| |
|
||| |||| ||||| |||| |||||| ||| ||||||||| |||||||| || ||||| ||||| ||||||||| |
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|
| T |
37298333 |
cttctttgccccccgcttaggcctttggaaccataccctccaacccttgtgttaatagcatcctgcaggcccatttct |
37298256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 37291315 - 37291163
Alignment:
| Q |
30 |
cataacatagtaagaagcagcactatcaagtccactagttggttcatcaagaaaaagaagtcttggacgtgttaggatctcaatgcaaatgctaactctc |
129 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| ||||| ||||||||||| || |||||||| || || ||||| ||||| ||||||||||||| ||| |
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| T |
37291315 |
cataacatagtaggaagctgcactatcaagtccgctagtcggttcatcaaggaagagaagtctcgggcgcgttagaatctcgatgcaaatgctaagtctt |
37291216 |
T |
|
| Q |
130 |
cttttttgacccccacttatgcctttcacaccccaccctccaattcttgtgtt |
182 |
Q |
| |
|
|| |||| || ||||||| ||||| |||||| ||||||| |||||||| |
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|
| T |
37291215 |
ctcctttgtcctccacttagacctttagaaccccatcctccaacccttgtgtt |
37291163 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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