View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_330 (Length: 246)
Name: NF10855A_low_330
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_330 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 31069428 - 31069661
Alignment:
| Q |
1 |
ttcttcttgattttctgccttgtttgcctttcatgtcttcttccttcagcaaggtgatgttaagcttcaaaaccattccccctattcttcacttgtgtct |
100 |
Q |
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| T |
31069428 |
ttcttctggattttcttccttgtttgcccttcatgtcttcttccttcagcaaggtgatgttaagcttcaaaaccattccccctattcttcacttgtgtct |
31069527 |
T |
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| Q |
101 |
cttcttctctttgaattctctatttttcttagttctcgtgatttgatttttacctttattgtgtttctatgaagttgttcttctgctacttgaaagattt |
200 |
Q |
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| T |
31069528 |
cttcttctctttgaattctctatttttcttagttctcgtgatttgatttttacctttattgtttttctatgaagttgttcttctgctacttgaaagattt |
31069627 |
T |
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| Q |
201 |
tgtgggaagagaaatgacggtagaactcaagaat |
234 |
Q |
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| T |
31069628 |
tgcgggaagagaaatgacggtagaactcaagaat |
31069661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 37614329 - 37614398
Alignment:
| Q |
164 |
tttctatgaagttgttcttctgctacttgaaagattttgtgggaagagaaatgacggtagaactcaagaa |
233 |
Q |
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| T |
37614329 |
tttctatgaagctgttcttctcgtacttcaaagatttggtgggaagagaagtgacggttgaactcaagaa |
37614398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 42440432 - 42440506
Alignment:
| Q |
159 |
ttgtgtttctatgaagttgttcttctgctacttgaaagattttgtgggaagagaaatgacggtagaactcaagaa |
233 |
Q |
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|||| ||| |||| |||||||||||| ||||| |||||||| |||||||||||| | ||||||||||||||||| |
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| T |
42440432 |
ttgtttttgtatgtagttgttcttctcatacttcaaagatttggtgggaagagaagttacggtagaactcaagaa |
42440506 |
T |
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