View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_333 (Length: 246)

Name: NF10855A_low_333
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_333
NF10855A_low_333
[»] chr8 (22 HSPs)
chr8 (50-234)||(19357997-19358181)
chr8 (50-234)||(19339974-19340158)
chr8 (21-234)||(19499828-19500041)
chr8 (50-232)||(19536768-19536950)
chr8 (50-234)||(19348959-19349143)
chr8 (50-234)||(19399718-19399902)
chr8 (26-234)||(19407998-19408203)
chr8 (26-234)||(19455018-19455223)
chr8 (26-234)||(19525854-19526059)
chr8 (50-234)||(19380024-19380208)
chr8 (21-234)||(19486153-19486363)
chr8 (71-234)||(19416078-19416241)
chr8 (71-234)||(19479940-19480103)
chr8 (71-234)||(19550864-19551027)
chr8 (50-234)||(19169833-19170017)
chr8 (71-234)||(19581661-19581824)
chr8 (60-232)||(19258190-19258362)
chr8 (101-234)||(19290205-19290338)
chr8 (27-218)||(19274086-19274277)
chr8 (179-238)||(19148607-19148666)
chr8 (179-238)||(15955578-15955637)
chr8 (179-238)||(19187868-19187927)
[»] chr1 (2 HSPs)
chr1 (146-234)||(36310790-36310878)
chr1 (21-89)||(36310723-36310791)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 19358181 - 19357997
Alignment:
Q  50 ttcacatgatgtagaaattgctgttgtagaataggtgttggtgtctggccctttagaagttgtttcgctctcaaagatctctcttctaatatagaatgct 149  Q
    ||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |  ||| ||||||||||||||||||||||||||    
T  19358181 ttcacatgaggtagaaattgctgtcgtagaataggtgtcggtgtctggccctttagaagttgtttccccgtcatagatctctcttctaatatagaatgct 19358082  T
Q  150 ggccttcttggtgaggttgggagttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcatctgcatatt 234  Q
    || ||||||||| | |||| |||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||  |||||||    
T  19358081 ggtcttcttggtaaagttgtgagttcatatttgtttgttaacattgatataacatcggacattgtaggtcgatcattagcatatt 19357997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 19340158 - 19339974
Alignment:
Q  50 ttcacatgatgtagaaattgctgttgtagaataggtgttggtgtctggccctttagaagttgtttcgctctcaaagatctctcttctaatatagaatgct 149  Q
    ||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |  ||| |||||||||||||||||||||||||     
T  19340158 ttcacatgaggtagaaattgctgtcgtagaataggtgtcggtgtctggccctttagaagttgtttccccgtcatagatctctcttctaatatagaatgcc 19340059  T
Q  150 ggccttcttggtgaggttgggagttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcatctgcatatt 234  Q
    || ||||||||| | |||| ||||| || ||||||||||||||||||||||||||| |||||||| ||||||||||  |||||||    
T  19340058 ggtcttcttggtaaagttgtgagtttatatttgtttgttaacattgatataacatcggacattgtaggtcgatcattagcatatt 19339974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 234
Target Start/End: Original strand, 19499828 - 19500041
Alignment:
Q  21 atatggattatttatatttttgcctcaatttcacatgatgtagaaattgctgttgtagaataggtgttggtgtctggccctttagaagttgtttcgctct 120  Q
    |||| ||| |||||||||||  | || | ||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| | ||    
T  19499828 atattgataatttatattttcccttctacttcacatgaggtagaaattgctgtcgtagaataggtgtcggtgtcttgccctttagaagttgtttccccct 19499927  T
Q  121 caaagatctctcttctaatatagaatgctggccttcttggtgaggttgggagttcatgtttgtttgttaacattgatataacatcagacattgttggtcg 220  Q
    |||||||||||||||||| ||| |||||||||||||||||  || ||| |||||||| ||||||||| |||| ||||||||| ||||||||||| |||||    
T  19499928 caaagatctctcttctaacataaaatgctggccttcttggcaagtttgtgagttcatatttgtttgtcaacactgatataacttcagacattgtaggtcg 19500027  T
Q  221 atcatctgcatatt 234  Q
    || || ||||||||    
T  19500028 attatttgcatatt 19500041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 50 - 232
Target Start/End: Original strand, 19536768 - 19536950
Alignment:
Q  50 ttcacatgatgtagaaattgctgttgtagaataggtgttggtgtctggccctttagaagttgtttcgctctcaaagatctctcttctaatatagaatgct 149  Q
    ||||||||| | |||||||| ||| ||||||||||||| |||||||  |||||| ||||||||||| | ||||||||| | |||||||| ||||||||||    
T  19536768 ttcacatgaggaagaaattgttgtcgtagaataggtgtcggtgtctttccctttggaagttgtttccccctcaaagatatttcttctaacatagaatgct 19536867  T
Q  150 ggccttcttggtgaggttgggagttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcatctgcata 232  Q
    || ||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  19536868 ggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatataacatcagacattgtaggtcgatcatttgcata 19536950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 19349143 - 19348959
Alignment:
Q  50 ttcacatgatgtagaaattgctgttgtagaataggtgttggtgtctggccctttagaagttgtttcgctctcaaagatctctcttctaatatagaatgct 149  Q
    ||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||| ||| ||||||| | |||||||||||||||||||| ||| ||||||    
T  19349143 ttcacatgaagtagaaattgctgtcgtagaataggtgtcggtgtcttgccctttggaaattgtttccccctcaaagatctctcttctaacataaaatgct 19349044  T
Q  150 ggccttcttggtgaggttgggagttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcatctgcatatt 234  Q
    || ||||||||| || ||| |||||  | ||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||    
T  19349043 ggtcttcttggtaagtttgtgagttggtatttgtttgttaacacagatataacatcagacattgttggtcgatcatttgcatatt 19348959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 19399902 - 19399718
Alignment:
Q  50 ttcacatgatgtagaaattgctgttgtagaataggtgttggtgtctggccctttagaagttgtttcgctctcaaagatctctcttctaatatagaatgct 149  Q
    ||||||||| |||||||||| ||| |||||||||||| ||| ||||  |||||| ||||||||||| |  ||||||||||||| ||||||||| ||||||    
T  19399902 ttcacatgaggtagaaattgttgtcgtagaataggtgatggcgtcttcccctttggaagttgtttccccttcaaagatctctcgtctaatataaaatgct 19399803  T
Q  150 ggccttcttggtgaggttgggagttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcatctgcatatt 234  Q
    || ||||||||| |||||| |||||||| |||||||| |||||||||||| ||||| |||||||| |||||||||| ||||||||    
T  19399802 ggtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcgatcatttgcatatt 19399718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 26 - 234
Target Start/End: Complemental strand, 19408203 - 19407998
Alignment:
Q  26 gattatttatatttttgcctcaatttcacatgatgtagaaattgctgttgtagaataggtgttggtgtctggccctttagaagttgtttcgctctcaaag 125  Q
    |||||||||||||||  | || | |||||| || ||||||||||   ||||||||||||||| |||||||||| |||||||||||||||| || ||||      
T  19408203 gattatttatattttcccttctacttcacacgaggtagaaattg---ttgtagaataggtgtcggtgtctggcactttagaagttgtttctctatcaaga 19408107  T
Q  126 atctctcttctaatatagaatgctggccttcttggtgaggttgggagttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcat 225  Q
    || |||||||||| ||| |||||||| ||||| |||   |||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  19408106 atgtctcttctaacataaaatgctggtcttctaggtattgttgtgagttcatatttgtttgttaacattgatataacatcagacattgtaggtcgatcat 19408007  T
Q  226 ctgcatatt 234  Q
     ||||||||    
T  19408006 ttgcatatt 19407998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 26 - 234
Target Start/End: Complemental strand, 19455223 - 19455018
Alignment:
Q  26 gattatttatatttttgcctcaatttcacatgatgtagaaattgctgttgtagaataggtgttggtgtctggccctttagaagttgtttcgctctcaaag 125  Q
    |||||||||||||||  | || | |||||| || ||||||||||   ||||||||||||||| |||||||||| |||||||||||||||| || ||||      
T  19455223 gattatttatattttcccttctacttcacacgaggtagaaattg---ttgtagaataggtgtcggtgtctggcactttagaagttgtttctctatcaaga 19455127  T
Q  126 atctctcttctaatatagaatgctggccttcttggtgaggttgggagttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcat 225  Q
    || |||||||||| ||| |||||||| ||||| |||   |||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  19455126 atgtctcttctaacataaaatgctggtcttctgggtattgttgtgagttcatatttgtttgttaacattgatataacatcagacattgtaggtcgatcat 19455027  T
Q  226 ctgcatatt 234  Q
     ||||||||    
T  19455026 ttgcatatt 19455018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 19525854 - 19526059
Alignment:
Q  26 gattatttatatttttgcctcaatttcacatgatgtagaaattgctgttgtagaataggtgttggtgtctggccctttagaagttgtttcgctctcaaag 125  Q
    |||||||||||||||  | || | |||||| || ||||||||||   ||||||||||||||| |||||||||| |||||||||||||||| || ||||      
T  19525854 gattatttatattttcccttctacttcacacgaggtagaaattg---ttgtagaataggtgtcggtgtctggcactttagaagttgtttctctatcaaga 19525950  T
Q  126 atctctcttctaatatagaatgctggccttcttggtgaggttgggagttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcat 225  Q
    || |||||||||| ||| |||||||| ||||| |||   |||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  19525951 atgtctcttctaacataaaatgctggtcttctgggtattgttgtgagttcatatttgtttgttaacattgatataacatcagacattgtaggtcgatcat 19526050  T
Q  226 ctgcatatt 234  Q
     ||||||||    
T  19526051 ttgcatatt 19526059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 19380208 - 19380024
Alignment:
Q  50 ttcacatgatgtagaaattgctgttgtagaataggtgttggtgtctggccctttagaagttgtttcgctctcaaagatctctcttctaatatagaatgct 149  Q
    |||| |||| |||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||    
T  19380208 ttcaaatgaggtagaaattgttgtcgtagaataggtgtcggtgtcttgccctttagaagttgtttccccctcaaagatctctcttctaacatagaatgct 19380109  T
Q  150 ggccttcttggtgaggttgggagttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcatctgcatatt 234  Q
    ||  |||||||  || ||| |||| ||| ||||||||| |||| ||||||||| ||||||||||| ||||||||||  |||||||    
T  19380108 ggttttcttggcaagtttgtgagtacatatttgtttgtcaacactgatataacttcagacattgtaggtcgatcattagcatatt 19380024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 19486363 - 19486153
Alignment:
Q  21 atatggattatttatatttttgcctcaatttcacatgatgtagaaattgctgttgtagaataggtgttggtgtctggccctttagaagttgtttcgctct 120  Q
    |||| |||||||||||||||  | || | |||||| || ||||||||||   ||||||||||||||| |||||||||| |||||||||||||||| |  |    
T  19486363 atattgattatttatattttcccttccacttcacacgaggtagaaattg---ttgtagaataggtgtcggtgtctggcactttagaagttgtttctccat 19486267  T
Q  121 caaagatctctcttctaatatagaatgctggccttcttggtgaggttgggagttcatgtttgtttgttaacattgatataacatcagacattgttggtcg 220  Q
    |||  || || ||||||| ||| |||||||| ||||| |||   |||| |||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  19486266 caagaatgtcccttctaacataaaatgctggtcttctgggtattgttgtgagttcatatttgtttgttaacattgatataacatcagacattgtaggtcg 19486167  T
Q  221 atcatctgcatatt 234  Q
    ||||| ||||||||    
T  19486166 atcatttgcatatt 19486153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 234
Target Start/End: Complemental strand, 19416241 - 19416078
Alignment:
Q  71 tgttgtagaataggtgttggtgtctggccctttagaagttgtttcgctctcaaagatctctcttctaatatagaatgctggccttcttggtgaggttggg 170  Q
    ||||||||||||||||| |||||||||| |||||||||||||||| |  ||||  || |||||||||| ||| |||||||| ||||| |||   |||| |    
T  19416241 tgttgtagaataggtgtcggtgtctggcactttagaagttgtttctccatcaagaatgtctcttctaacataaaatgctggtcttctgggtattgttgtg 19416142  T
Q  171 agttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcatctgcatatt 234  Q
    ||||||| ||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||    
T  19416141 agttcatatttgtttgttaacattgctataacatcagacattgtaggtcgatcatttgcatatt 19416078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 19479940 - 19480103
Alignment:
Q  71 tgttgtagaataggtgttggtgtctggccctttagaagttgtttcgctctcaaagatctctcttctaatatagaatgctggccttcttggtgaggttggg 170  Q
    ||||||||||||||||| | |||||||| |||||||||||||||| |  ||||  || |||||||||| ||| |||||||| ||||| |||   |||| |    
T  19479940 tgttgtagaataggtgtagatgtctggcactttagaagttgtttctccatcaagaatgtctcttctaacataaaatgctggtcttctgggtattgttgtg 19480039  T
Q  171 agttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcatctgcatatt 234  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  19480040 agttcatatttgtttgttaacattgatataacatcagacattgtaggtcgatcatttgcatatt 19480103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 19550864 - 19551027
Alignment:
Q  71 tgttgtagaataggtgttggtgtctggccctttagaagttgtttcgctctcaaagatctctcttctaatatagaatgctggccttcttggtgaggttggg 170  Q
    ||||||||||||||||| | |||||||| |||||||||||||||| |  ||||  || |||||||||| ||| |||||||| ||||| |||   |||| |    
T  19550864 tgttgtagaataggtgtagatgtctggcactttagaagttgtttctccatcaagaatgtctcttctaacataaaatgctggtcttctgggtattgttgtg 19550963  T
Q  171 agttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcatctgcatatt 234  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  19550964 agttcatatttgtttgttaacattgatataacatcagacattgtaggtcgatcatttgcatatt 19551027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 50 - 234
Target Start/End: Original strand, 19169833 - 19170017
Alignment:
Q  50 ttcacatgatgtagaaattgctgttgtagaataggtgttggtgtctggccctttagaagttgtttcgctctcaaagatctctcttctaatatagaatgct 149  Q
    ||||||||||||||||||||| ||  ||||||||||||  || ||| ||||||||||||||||||| |  || |||||||||||  ||| ||| ||||||    
T  19169833 ttcacatgatgtagaaattgcagtcatagaataggtgtcagtatctagccctttagaagttgtttccccttcgaagatctctctggtaacataaaatgct 19169932  T
Q  150 ggccttcttggtgaggttgggagttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcatctgcatatt 234  Q
    || ||||||||| ||||||   || | | |||||||||||||||||||||||||||||||||||| ||||||| || ||||||||    
T  19169933 ggtcttcttggtaaggttgtcggtgcgtatttgtttgttaacattgatataacatcagacattgtaggtcgattatttgcatatt 19170017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 234
Target Start/End: Complemental strand, 19581824 - 19581661
Alignment:
Q  71 tgttgtagaataggtgttggtgtctggccctttagaagttgtttcgctctcaaagatctctcttctaatatagaatgctggccttcttggtgaggttggg 170  Q
    ||||||||||||||||| | |||||||| |||||||||||||||| |  ||||  || |||||||||| ||| |||||||| ||||| |||   |||| |    
T  19581824 tgttgtagaataggtgtagatgtctggcactttagaagttgtttctccatcaagaatgtctcttctaacataaaatgctggtcttctgggtattgttgtg 19581725  T
Q  171 agttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcatctgcatatt 234  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  19581724 agttcatatttgtttgttaacattgatataacatcggacattgtaggtcgatcatttgcatatt 19581661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 232
Target Start/End: Complemental strand, 19258362 - 19258190
Alignment:
Q  60 gtagaaattgctgttgtagaataggtgttggtgtctggccctttagaagttgtttcgctctcaaagatctctcttctaatatagaatgctggccttcttg 159  Q
    |||||||||| ||| |||||||||||||    ||| | | ||||  |||||||||| |  |||| |||||||||| ||| |||||||||||| |||||||    
T  19258362 gtagaaattgttgtcgtagaataggtgtcacagtccgacactttcaaagttgtttccccttcaaggatctctcttgtaaaatagaatgctggtcttcttg 19258263  T
Q  160 gtgaggttgggagttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcatctgcata 232  Q
    |   ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  19258262 gcatggttgtgagttcatatttgtttgttaacactgatataacatcagacattgttggtcgatcatttgcata 19258190  T

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Target: chr8; HSP #18
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 234
Target Start/End: Complemental strand, 19290338 - 19290205
Alignment:
Q  101 tttagaagttgtttcgctctcaaagatctctcttctaatatagaatgctggccttcttggtgaggttgggagttcatgtttgtttgttaacattgatata 200  Q
    ||||||||||||||| |  ||||||||||||||||||| ||| ||||| || ||||||||| |||||| |||||||| |||||||| ||||||||||||     
T  19290338 tttagaagttgtttccccttcaaagatctctcttctaacataaaatgccggtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatc 19290239  T
Q  201 acatcagacattgttggtcgatcatctgcatatt 234  Q
    ||||| |||||||| || ||||||| ||||||||    
T  19290238 acatccgacattgtaggacgatcatttgcatatt 19290205  T

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Target: chr8; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 19274086 - 19274277
Alignment:
Q  27 attatttatatttttgcctcaatttcacatgatgtagaaattgctgttgtagaataggtgttggtgtctggccctttagaagttgtttcgctctcaaaga 126  Q
    ||||||||||||||  | || | ||||||||| ||||||||  ||||  ||||||| ||||  ||||| | | |||  ||||||||||| |  |||||||    
T  19274086 attatttatattttctcttctacttcacatgaggtagaaatcactgtcatagaatatgtgtcagtgtcggacacttacgaagttgtttccccgtcaaaga 19274185  T
Q  127 tctctcttctaatatagaatgctggccttcttggtgaggttgggagttcatgtttgtttgttaacattgatataacatcagacattgttggt 218  Q
    | |||||||||| ||||||  || |  |||||||| |||||| |||||||| |||||||||||||| ||| |||||||||||||||||||||    
T  19274186 tttctcttctaacatagaacccttgttttcttggtaaggttgtgagttcatatttgtttgttaacaatgacataacatcagacattgttggt 19274277  T

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Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 19148607 - 19148666
Alignment:
Q  179 tttgtttgttaacattgatataacatcagacattgttggtcgatcatctgcatattcttc 238  Q
    |||||| |||||||||||||||||||  |||||||| || ||||||||||||| ||||||    
T  19148607 tttgttagttaacattgatataacattggacattgtcggacgatcatctgcattttcttc 19148666  T

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Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 15955637 - 15955578
Alignment:
Q  179 tttgtttgttaacattgatataacatcagacattgttggtcgatcatctgcatattcttc 238  Q
    |||||||||||| |||||||||||||  ||||| || || ||||||||||||| ||||||    
T  15955637 tttgtttgttaatattgatataacattggacatggtggggcgatcatctgcattttcttc 15955578  T

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Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 19187927 - 19187868
Alignment:
Q  179 tttgtttgttaacattgatataacatcagacattgttggtcgatcatctgcatattcttc 238  Q
    ||||||||||||||||||||||||||   |||| || || ||||||||||||| ||||||    
T  19187927 tttgtttgttaacattgatataacattgcacatggtgggacgatcatctgcattttcttc 19187868  T

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Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 36310790 - 36310878
Alignment:
Q  146 tgctggccttcttggtgaggttgggagttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcatctgcatatt 234  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36310790 tgctggccttctcggtgaggttgggagttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcatttgcatatt 36310878  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 36310723 - 36310791
Alignment:
Q  21 atatggattatttatatttttgcctcaatttcacatgatgtagaaattgctgttgtagaataggtgttg 89  Q
    |||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  36310723 atatggattacttatatttttgcttcaatttcacatgatgtagaaactgctgttgtagaataggtgttg 36310791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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