View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_335 (Length: 245)
Name: NF10855A_low_335
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_335 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 45481248 - 45481023
Alignment:
| Q |
1 |
caatgggttagaccattctttagggtcacgtgatatggcccaaacattgaccaatagagtggcacctttagggatatgataattaaagatctcacaacta |
100 |
Q |
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| T |
45481248 |
caatgggttagaccattctttagggtcgcgtgatatggcccaaacattgaccaatagagtagcacctttagggatatgatagttaaagatctcacaactt |
45481149 |
T |
|
| Q |
101 |
tgtgttgcaacacgtgggagggatagaggagttgatggatgaagacgtaatgtttccttcacaacagcctctaagtaaggaaggtgggtcaagtcttgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45481148 |
tgtgttgcaacacgtgggagggatagaggagttgatggatgaagacgtaatgtttccttcacaacagcctctaagtaaggaaggttggtcaagtcttgtt |
45481049 |
T |
|
| Q |
201 |
cagttaccaatctatctcgtcccaca |
226 |
Q |
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||||||||||||| |||||||||||| |
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| T |
45481048 |
cagttaccaatctgtctcgtcccaca |
45481023 |
T |
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