View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_339 (Length: 245)

Name: NF10855A_low_339
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_339
NF10855A_low_339
[»] chr5 (6 HSPs)
chr5 (14-233)||(29712802-29713021)
chr5 (43-190)||(29695721-29695868)
chr5 (23-170)||(29687640-29687787)
chr5 (76-145)||(42562726-42562795)
chr5 (79-141)||(1812043-1812105)
chr5 (79-140)||(178638-178699)
[»] chr1 (5 HSPs)
chr1 (42-140)||(24309796-24309894)
chr1 (79-154)||(24322067-24322142)
chr1 (40-141)||(24340032-24340133)
chr1 (82-140)||(24415456-24415514)
chr1 (79-127)||(24366787-24366835)
[»] chr8 (5 HSPs)
chr8 (30-141)||(15348480-15348591)
chr8 (78-164)||(12199902-12199988)
chr8 (78-164)||(12444330-12444416)
chr8 (78-164)||(12194896-12194982)
chr8 (78-164)||(12439324-12439410)
[»] chr4 (31 HSPs)
chr4 (43-158)||(48156789-48156904)
chr4 (30-141)||(48862859-48862973)
chr4 (46-134)||(7904657-7904745)
chr4 (46-137)||(7774194-7774285)
chr4 (45-155)||(45366582-45366695)
chr4 (46-157)||(48148047-48148161)
chr4 (46-135)||(7877344-7877433)
chr4 (38-141)||(48735669-48735775)
chr4 (43-158)||(45372419-45372534)
chr4 (51-134)||(49044599-49044682)
chr4 (45-137)||(7771026-7771118)
chr4 (75-135)||(49048993-49049053)
chr4 (43-137)||(7907947-7908041)
chr4 (78-140)||(33134223-33134285)
chr4 (43-141)||(48891027-48891125)
chr4 (44-141)||(7765239-7765336)
chr4 (79-139)||(48870162-48870222)
chr4 (79-139)||(48885848-48885908)
chr4 (78-137)||(7813102-7813161)
chr4 (78-137)||(7822591-7822650)
chr4 (43-134)||(49041500-49041591)
chr4 (45-137)||(7789711-7789803)
chr4 (47-134)||(7238086-7238173)
chr4 (78-137)||(7800259-7800318)
chr4 (78-133)||(33133663-33133718)
chr4 (30-141)||(48170935-48171049)
chr4 (46-131)||(48875474-48875559)
chr4 (38-134)||(37827351-37827447)
chr4 (76-139)||(48898342-48898405)
chr4 (82-137)||(48902572-48902627)
chr4 (44-137)||(7786065-7786158)
[»] scaffold0508 (1 HSPs)
scaffold0508 (42-141)||(11880-11979)
[»] chr6 (1 HSPs)
chr6 (39-141)||(21015394-21015496)
[»] chr3 (4 HSPs)
chr3 (78-141)||(11024934-11024997)
chr3 (78-137)||(11006359-11006418)
chr3 (78-141)||(11015922-11015985)
chr3 (78-137)||(47452304-47452363)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 29712802 - 29713021
Alignment:
Q  14 atagacttataggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcactt 113  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712802 atagaattctaggagcgtgtgttttggcggtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcactt 29712901  T
Q  114 gaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaactcaatagatagatattgctctgtcttcttcatcgtctccattcacacg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712902 gaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaactcaatagatagatattgctctgtcttcttcatcgtctccattcacacg 29713001  T
Q  214 tttcctcctttgccaatatt 233  Q
    ||||||||||||||||||||    
T  29713002 tttcctcctttgccaatatt 29713021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 43 - 190
Target Start/End: Complemental strand, 29695868 - 29695721
Alignment:
Q  43 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 142  Q
    ||||||||||||||||||||||| || | || |||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| || ||||||     
T  29695868 gtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaacgaataagagacttgactggtaacc 29695769  T
Q  143 ttaaaaggatttgaatgattaactcaatagatagatattgctctgtct 190  Q
    |||| |||||||||||||||||||||| ||  ||||||  ||||||||    
T  29695768 ttaataggatttgaatgattaactcaaaaggaagatatgtctctgtct 29695721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 29687787 - 29687640
Alignment:
Q  23 taggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaat 122  Q
    |||||| |||||  ||||| |||||||||||||| |||||||| || | || |||||| || |||||||||||  |||||||||| |||||||| || ||    
T  29687787 taggagtgtgtgcattggcggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtat 29687688  T
Q  123 aagagacttcaccggtaacattaaaaggatttgaatgattaactcaat 170  Q
    |||||||||||| |||||| ||| ||||||||||||||| || |||||    
T  29687687 aagagacttcactggtaactttagaaggatttgaatgatcaattcaat 29687640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 42562726 - 42562795
Alignment:
Q  76 tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacatta 145  Q
    |||||||| |||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  42562726 tgagagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaacatta 42562795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 1812105 - 1812043
Alignment:
Q  79 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 141  Q
    ||||||||||||||||||||||||||||| || ||| |||| || ||| ||||||| ||||||    
T  1812105 gagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaac 1812043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 178699 - 178638
Alignment:
Q  79 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 140  Q
    ||||| ||||| |||||  |||||||||| || |||||||||||||||||||| || |||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagagacttaactggtaa 178638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 24309894 - 24309796
Alignment:
Q  42 agtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 140  Q
    |||||||||||||||||||||||| || | ||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  24309894 agtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaa 24309796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 24322142 - 24322067
Alignment:
Q  79 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggattt 154  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||| | ||| ||| ||||||||    
T  24322142 gagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaaccttagaaggattt 24322067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 24340133 - 24340032
Alignment:
Q  40 gcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 139  Q
    ||||||| |||||| ||||||||||| || | |   | ||||||||| ||||||||| ||||||||||  | |||||||||||||||||||| |||||||    
T  24340133 gcagtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaacgaataagagacttaaccggta 24340034  T
Q  140 ac 141  Q
    ||    
T  24340033 ac 24340032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 24415514 - 24415456
Alignment:
Q  82 ataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 140  Q
    ||||||||||||||  |||||| |||||| |||||||||||||||||||| ||||||||    
T  24415514 ataagagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccggtaa 24415456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 24366835 - 24366787
Alignment:
Q  79 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagag 127  Q
    |||||||||||||||||| |||| ||||| || ||||||||||| ||||    
T  24366835 gagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagag 24366787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 15348591 - 15348480
Alignment:
Q  30 gtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagac 129  Q
    |||||||  ||| |||| ||||||||||||||||||||| | ||  | ||||||||||||||||||  ||||||||||||| |||||||| |||||||||    
T  15348591 gtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagac 15348492  T
Q  130 ttcaccggtaac 141  Q
    ||||||||||||    
T  15348491 ttcaccggtaac 15348480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 12199988 - 12199902
Alignment:
Q  78 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 164  Q
    ||||||||||||||||||| |||||||||| || |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12199988 agagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12199902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 12444416 - 12444330
Alignment:
Q  78 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 164  Q
    ||||||||||||||||||| |||||||||| || |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12444416 agagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12444330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 12194982 - 12194896
Alignment:
Q  78 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 164  Q
    |||||||||||| |||||| ||||||||| ||| |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12194982 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12194896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 12439410 - 12439324
Alignment:
Q  78 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 164  Q
    |||||||||||| |||||| ||||||||| ||| |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12439410 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12439324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 48156789 - 48156904
Alignment:
Q  43 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 142  Q
    |||| ||||||||| |||||||| |||| ||  |  |||||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||     
T  48156789 gtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaacc 48156888  T
Q  143 ttaaaaggatttgaat 158  Q
     |||||||||||||||    
T  48156889 ataaaaggatttgaat 48156904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 48862973 - 48862859
Alignment:
Q  30 gtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcag-at--tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataaga 126  Q
    |||||||  ||||||||||||||||||||||||||| || | || ||  ||||||||||||||||||||  |||| |||||||| |||||||||||||||    
T  48862973 gtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataaga 48862874  T
Q  127 gacttcaccggtaac 141  Q
    |||||||||||||||    
T  48862873 gacttcaccggtaac 48862859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 7904745 - 7904657
Alignment:
Q  46 agttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 134  Q
    |||||||||||||||||||| || | ||  | |||||||||||||||||||||||||||||| || |||||||| ||||||||||||||    
T  7904745 agttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcac 7904657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 7774194 - 7774285
Alignment:
Q  46 agttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 137  Q
    |||||||||||||||||||| ||||  |  | |||||||||||||||||||| ||||||||| || |||||| |||||||||||||||||||    
T  7774194 agttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccgg 7774285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 45366582 - 45366695
Alignment:
Q  45 aagttgaaaatgtgaatttgcgaaatcagatt---gagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 141  Q
    ||||||||||||||||||||| || |  || |   |||||||||||||||||||  |||||||||||||||||||||| |||||||||||||| ||||||    
T  45366582 aagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaac 45366681  T
Q  142 attaaaaggatttg 155  Q
     |||  ||||||||    
T  45366682 cttagtaggatttg 45366695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 48148047 - 48148161
Alignment:
Q  46 agttgaaaatgtgaatttgcgaaatcag-at--tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 142  Q
    |||| |||||||||||||||||| | || ||  ||||||||||||||||||||  ||||||| || || ||||||||||||||||||||||| ||||||     
T  48148047 agttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcactggtaacc 48148146  T
Q  143 ttaaaaggatttgaa 157  Q
    || ||||||||||||    
T  48148147 ttgaaaggatttgaa 48148161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 7877433 - 7877344
Alignment:
Q  46 agttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcacc 135  Q
    |||||||||||||||||||| ||||  |  | |||||||||||||||||||| |||||||| ||| |||||||| |||||||||||||||    
T  7877433 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcacc 7877344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 48735669 - 48735775
Alignment:
Q  38 tggcagtaagttgaaaatgtgaatttgcgaaatcagattga---gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 134  Q
    |||| |||| || ||||||||||||||| |||||||  | |   |||||||||||||||||  |||||||||| || |||||||||||||||||||||||    
T  48735669 tggcggtaatttcaaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcac 48735768  T
Q  135 cggtaac 141  Q
    |||||||    
T  48735769 cggtaac 48735775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 45372419 - 45372534
Alignment:
Q  43 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 142  Q
    |||| |||||||||||||||||| |||| ||  | |||||||| |||||||||  |||||||||| || |||||||| ||||||||||||||||| |||     
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacc 45372518  T
Q  143 ttaaaaggatttgaat 158  Q
    |||  || ||||||||    
T  45372519 ttagtagaatttgaat 45372534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 49044599 - 49044682
Alignment:
Q  51 aaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 134  Q
    ||||||||||||||| || |  | ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||    
T  49044599 aaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcac 49044682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 7771118 - 7771026
Alignment:
Q  45 aagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 137  Q
    ||||||||||||||||||| | || | ||  | ||||||||||||||||||  ||||||||||||| |||||||  |||||||||||||||||    
T  7771118 aagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccgg 7771026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 49048993 - 49049053
Alignment:
Q  75 ttgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcacc 135  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||    
T  49048993 ttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcacc 49049053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 7908041 - 7907947
Alignment:
Q  43 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 137  Q
    ||||||||||||||||||||||| ||||  |    ||||||||||||||||||| |||||| |||  ||||||||||  ||||||||||||||||    
T  7908041 gtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccgg 7907947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 33134223 - 33134285
Alignment:
Q  78 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 140  Q
    ||||||||||||||| ||   |||||||||||| |||||||||||||||||||||||||||||    
T  33134223 agagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaa 33134285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 48891125 - 48891027
Alignment:
Q  43 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 141  Q
    |||||||||||||| |||||||| |||| ||  |  |||| ||||||||||||  ||||||||||||| |||||||| ||||||||||| |||| ||||    
T  48891125 gtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataac 48891027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 7765336 - 7765239
Alignment:
Q  44 taagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 141  Q
    ||||||| |||||||||||||| || | ||  | |||||||| |||||||||||||||||||| ||||||||||   |  ||||||||||||||||||    
T  7765336 taagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaac 7765239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 48870222 - 48870162
Alignment:
Q  79 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 139  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||||||||||    
T  48870222 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 48870162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 48885908 - 48885848
Alignment:
Q  79 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 139  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||||||||||    
T  48885908 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 48885848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 7813161 - 7813102
Alignment:
Q  78 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 137  Q
    ||||||||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7813161 agagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7813102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 7822650 - 7822591
Alignment:
Q  78 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 137  Q
    ||||||||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7822650 agagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7822591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 134
Target Start/End: Original strand, 49041500 - 49041591
Alignment:
Q  43 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 134  Q
    ||||||| |||||| |||||||| ||||  |  | ||||||||||||||||||  |||| |||||||| ||||||| |||||||||||||||    
T  49041500 gtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcac 49041591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 7789803 - 7789711
Alignment:
Q  45 aagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 137  Q
    ||||||||||||||||||| | || | ||  |  ||||||| |||||||||  ||||||||||||| |||||||  |||||||||||||||||    
T  7789803 aagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccgg 7789711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 7238086 - 7238173
Alignment:
Q  47 gttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 134  Q
    |||| |||||||||||||| || | ||  | ||||||||||||||||||  |||||||||| || |||||||  ||||||||||||||    
T  7238086 gttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcac 7238173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 7800318 - 7800259
Alignment:
Q  78 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 137  Q
    ||||| ||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7800318 agagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7800259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 33133718 - 33133663
Alignment:
Q  78 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttca 133  Q
    |||||||||||||||||| | |||||||| | | ||||||||||||||||||||||    
T  33133718 agagataagagaaaaccaaagcttacaaatgaatttgaaacgaataagagacttca 33133663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 48170935 - 48171049
Alignment:
Q  30 gtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcag-at--tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataaga 126  Q
    |||||||| ||| |||| ||||||||| |||||||| || | || ||  ||||||||||||| ||||||  |||||||||| || |||||||| | ||||    
T  48170935 gtgtgtttaggcggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaaga 48171034  T
Q  127 gacttcaccggtaac 141  Q
    |||||||||| ||||    
T  48171035 gacttcaccgataac 48171049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 48875559 - 48875474
Alignment:
Q  46 agttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagactt 131  Q
    |||||||||||||||||||  ||||  | ||  ||||| |||||||||||  |||| |||||||| ||||||||||| ||||||||    
T  48875559 agttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaacgaattagagactt 48875474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 37827351 - 37827447
Alignment:
Q  38 tggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 134  Q
    |||| ||||||||||||||||||||||| || || |  | ||| |||||||  |||||| |||||||||||||  | ||||  ||||||||||||||    
T  37827351 tggccgtaagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacgcatgtaaaacttataagagacttcac 37827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 48898405 - 48898342
Alignment:
Q  76 tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 139  Q
    ||||||||||| || |||||  |||||||||| |||||||||||  ||||||||||||| ||||    
T  48898405 tgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggta 48898342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 48902627 - 48902572
Alignment:
Q  82 ataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 137  Q
    ||||||||||||||  |||||||||| || ||||||||||| |||||||| |||||    
T  48902627 ataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccgg 48902572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 7786158 - 7786065
Alignment:
Q  44 taagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 137  Q
    ||||||| |||||||||||||| || | ||  | |||||||| ||||| ||||| |||||||||||| |||||    |||||||| ||||||||    
T  7786158 taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaacaatataagagatttcaccgg 7786065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 11979 - 11880
Alignment:
Q  42 agtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 141  Q
    |||||||||||||||||||||||| || | |   | ||||||||||||||||||| ||||||||||| | |||||||| ||||||||||| | |||||||    
T  11979 agtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaatcggtaac 11880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 141
Target Start/End: Complemental strand, 21015496 - 21015394
Alignment:
Q  39 ggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggt 138  Q
    |||||||| || |||||||||| |||| || |  | ||||||||||||||||||| ||||||||||||| ||||||||||| | ||||||| | ||||||    
T  21015496 ggcagtaatttcaaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggt 21015397  T
Q  139 aac 141  Q
    |||    
T  21015396 aac 21015394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 11024934 - 11024997
Alignment:
Q  78 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 141  Q
    |||||||||||  |||||| ||||||||||||| |||||||| || ||||||||||||||||||    
T  11024934 agagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaac 11024997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 11006359 - 11006418
Alignment:
Q  78 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 137  Q
    |||||||||||  |||||| |||||||||| ||||||||||| ||||| |||||||||||    
T  11006359 agagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccgg 11006418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 11015922 - 11015985
Alignment:
Q  78 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 141  Q
    |||||||||||  ||| || ||||||||||||| |||||||| || ||||||||||||||||||    
T  11015922 agagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaac 11015985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 47452304 - 47452363
Alignment:
Q  78 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 137  Q
    ||||||||||||||||||| ||||| ||| ||||||||| || | |||||||||||||||    
T  47452304 agagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccgg 47452363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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