View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_348 (Length: 244)
Name: NF10855A_low_348
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_348 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 33790973 - 33791189
Alignment:
| Q |
20 |
cagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatcaaaagaatcctagaaaatgcatgtccatcaacagtttcatg |
119 |
Q |
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| T |
33790973 |
cagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatcaaaagaatcctagaaaatgcatgtccatcaacagtttcatg |
33791072 |
T |
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| Q |
120 |
tgccgacataataccattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacaggaagacgtgatggcttagtatcaact |
219 |
Q |
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| T |
33791073 |
tgcagacataatatcattagcaacaagagattctgttgtcttagcaggtggaccaagttacaatgttcctacaggaagacgtgatggattagtatcaact |
33791172 |
T |
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| Q |
220 |
gttaatgatgtccatct |
236 |
Q |
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||||||||||| ||||| |
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| T |
33791173 |
gttaatgatgtacatct |
33791189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 203
Target Start/End: Complemental strand, 33764212 - 33764105
Alignment:
| Q |
96 |
tgcatgtccatcaacagtttcatgtgccgacataataccattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacagga |
195 |
Q |
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||||||||||||||| ||||||||||| ||||| || || | || ||||||||| | || | |||| | || ||||||| |||||| ||||||||||| |
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| T |
33764212 |
tgcatgtccatcaacggtttcatgtgcagacatcgtagcacttgctacaagagatgctgtggccttatctggaggaccaaaatacaatattcctacagga |
33764113 |
T |
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| Q |
196 |
agacgtga |
203 |
Q |
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|||||||| |
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| T |
33764112 |
agacgtga |
33764105 |
T |
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