View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_35 (Length: 434)
Name: NF10855A_low_35
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 23 - 422
Target Start/End: Complemental strand, 108899 - 108500
Alignment:
| Q |
23 |
aggcccatatcatagaacaccctaatattttagttctttatacgtctcacttatattagtgaagagagaccatagtttgcttataagaagagagtatttt |
122 |
Q |
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| T |
108899 |
aggcccatatcatagaacaccctaatattttagttctttatacgtcttacttatattagtgaagagagaccatagtttgcttataagaagagagtatttt |
108800 |
T |
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| Q |
123 |
ggcgaggagaacaaccaataagaagacnnnnnnnngtgaaagcaactctcttttttgtcagaactcatagccataaaactgagactggaattcgtccacc |
222 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
108799 |
ggcgaggagaacaaccaataagaagacaaaaaaaagtgaaagcaactctcttttttgtcagaactcatagccataaaactgagactggaattcgtccacc |
108700 |
T |
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| Q |
223 |
gttaggtcaaacttaaactttgccaaaagactcgggatatgtaaatcttcgtttgcattagatggatcgtcaaaaacaagtatggaaaaagagatatatc |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
108699 |
gttaggtcaaacttaaactttgccaaaagactcgggatatgtaaatcttcgtttgcattagatggatcgtcaaaaacaagtatggaaaaagagatatatc |
108600 |
T |
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| Q |
323 |
tcctcacatcttcttgttctcatttattaggctaatttttgggacaatttgtacactgtgtctctcttgtatacttatttgattacaatcaagccatatt |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
108599 |
tcctcacatcttcttgttctcatttattaggctaatttttgggacaatttgtacactgtgtctctcttgtatacttatttgattacaatcaagccatatt |
108500 |
T |
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