View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_350 (Length: 244)
Name: NF10855A_low_350
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_350 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 48674002 - 48674225
Alignment:
| Q |
1 |
caaaaaagattaatacattcctatgatttaaaagacgaatttgaatattaatttcatttttcattaaagaaaattatgatactcttgaatggttaacaag |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48674002 |
caaaaaagattaatacattcctataatttaaaagaccaatttgaatattaatttcatttttcattaaagaaaattatgatactcttgaatggttaacaag |
48674101 |
T |
|
| Q |
101 |
gtccaccactacctgataattgatgttgagaattatataatctagatcaatttcaataattcaatagattgtgtctggcaaccagtaagattcctcggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48674102 |
gtccaccactacctgataattgatgttgagaattatataatctagaccaatttcaataattcaatagattgtgtctggcaaccagtaagattcctcggtt |
48674201 |
T |
|
| Q |
201 |
gcaatggaaaggctcgtatggatc |
224 |
Q |
| |
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|||||||||||||| ||||||||| |
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|
| T |
48674202 |
gcaatggaaaggcttgtatggatc |
48674225 |
T |
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