View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_352 (Length: 244)
Name: NF10855A_low_352
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_352 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 4864230 - 4864443
Alignment:
| Q |
24 |
cccggttgaacttgactttccccgacattgactctataaaccgtctctaacgctttgtcgttaagaactttgtagtccgtgttgtcaaagtcaagtgatt |
123 |
Q |
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| T |
4864230 |
cccggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagttcgtgttgtcaaagtcaagtgatt |
4864329 |
T |
|
| Q |
124 |
tcaaataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4864330 |
tcaaataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattg |
4864429 |
T |
|
| Q |
224 |
atttatattattgg |
237 |
Q |
| |
|
|||||||||||||| |
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|
| T |
4864430 |
atttatattattgg |
4864443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 48 - 229
Target Start/End: Complemental strand, 4696953 - 4696772
Alignment:
| Q |
48 |
acattgactctataaaccgtctctaacgctttgtcgttaagaactttgtagtccgtgttgtcaaagtcaagtgatttcaaataatattttgggtcattga |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||| ||||||||||||| ||| |
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| T |
4696953 |
acattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccctgttgtctaagtcaagtgatatcaaatgatattttgggtcactga |
4696854 |
T |
|
| Q |
148 |
ggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttat |
229 |
Q |
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||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| || ||||| |
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| T |
4696853 |
ggtttgtgtaatagagaaaagaaggcattgacacaacttctattccgttaatgaaagcataataaggatttgactggtttat |
4696772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 4711832 - 4711654
Alignment:
| Q |
51 |
ttgactctataaaccgtctctaacgctttgtcgttaagaactttgtagtccgtgttgtcaaagtcaagtgatttcaaataatattttgggtcattgaggt |
150 |
Q |
| |
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||||||||||| ||| | || || |||||||||||| ||| || ||| |||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
4711832 |
ttgactctatataccatttccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggt |
4711733 |
T |
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| Q |
151 |
ttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttat |
229 |
Q |
| |
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|||||||| |||||||||||||||||||| | ||| ||||| |||||||| ||||||||||||||||| |||||||| |
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| T |
4711732 |
ccgtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttat |
4711654 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 4673011 - 4673195
Alignment:
| Q |
24 |
cccggttgaacttgactttccccgacattgactctataaaccgtctctaacgctttgtcgttaagaactttgtagtccgtgttgtcaaagtcaagtgatt |
123 |
Q |
| |
|
|||||| ||||||||||||| || || ||||||||||||||| | || || ||||| |||||| ||| || ||| ||||||||||| ||||||||||||| |
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| T |
4673011 |
cccggtggaacttgactttcaccaacgttgactctataaaccatttccaaagctttttcgttatgaatttggtattccgtgttgtctaagtcaagtgatt |
4673110 |
T |
|
| Q |
124 |
tcaaataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcata |
208 |
Q |
| |
|
|||||| ||| ||||||||| |||||||||||||||| |||||||||||||| ||||| | ||| ||||| |||||||| ||||| |
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| T |
4673111 |
tcaaatgataatttgggtcactgaggtttgtgtaatagagaaaagaaggcattgacacaatttcgattccgttaatgaaagcata |
4673195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 4637192 - 4637370
Alignment:
| Q |
51 |
ttgactctataaaccgtctctaacgctttgtcgttaagaactttgtagtccgtgttgtcaaagtcaagtgatttcaaataatattttgggtcattgaggt |
150 |
Q |
| |
|
||||||||||||||| |||| || |||||||| ||| ||| | ||| ||||||| || |||||| || ||||||||| || |||||||||||||||| |
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| T |
4637192 |
ttgactctataaaccatctccaaagctttgtctttatgaattcggtattccgtgtactctgagtcaactggtttcaaatagtaatttgggtcattgaggt |
4637291 |
T |
|
| Q |
151 |
ttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttat |
229 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||| || || ||||| || |||||| ||||||||||||| ||||| |
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| T |
4637292 |
ttgtgtaatagagaaaagaaggcattgacacaacttcgatcccgttaataaaagcataacaaggatttgattggtttat |
4637370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 103 - 220
Target Start/End: Original strand, 4653883 - 4654000
Alignment:
| Q |
103 |
tgttgtcaaagtcaagtgatttcaaataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaa |
202 |
Q |
| |
|
||||||| ||||||||||||| || | ||| |||||| |||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||||| |
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| T |
4653883 |
tgttgtctgagtcaagtgatttgaagtcataatttggggcattgaggtttgagtaatagagaaaagaaggcatagacacaacttcaattccattaatgaa |
4653982 |
T |
|
| Q |
203 |
ggcataataaggatttga |
220 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
4653983 |
agcataataaggatttga |
4654000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 51 - 209
Target Start/End: Complemental strand, 4783595 - 4783437
Alignment:
| Q |
51 |
ttgactctataaaccgtctctaacgctttgtcgttaagaactttgtagtccgtgttgtcaaagtcaagtgatttcaaataatattttgggtcattgaggt |
150 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||| || |||||||||||||| || || | || | | ||| | | ||||| |||||| |
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| T |
4783595 |
ttgactctataaaccgtctctaaagctttgtagttaagaacttgataatccgtgttgtcaaaaccaggtaaattgataagataatcttggtcactgaggt |
4783496 |
T |
|
| Q |
151 |
ttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataa |
209 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||| |
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|
| T |
4783495 |
ttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataa |
4783437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 51 - 209
Target Start/End: Complemental strand, 4816024 - 4815866
Alignment:
| Q |
51 |
ttgactctataaaccgtctctaacgctttgtcgttaagaactttgtagtccgtgttgtcaaagtcaagtgatttcaaataatattttgggtcattgaggt |
150 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||||||| | || || | || | | ||| | | ||||| |||||| |
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|
| T |
4816024 |
ttgactctataaaccgtctctaaagctttgttgttaagaacttggtattccgtgttgtcagaaccaggtaacttgatacgataatcttggtcactgaggt |
4815925 |
T |
|
| Q |
151 |
ttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataa |
209 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||| |
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|
| T |
4815924 |
ttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataa |
4815866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 4845796 - 4845606
Alignment:
| Q |
27 |
ggttgaacttgactttccccgacattgactctataaaccgtctctaacgctttgtcgttaagaactttgtagtccgtgttgtcaaagtcaagtgatttca |
126 |
Q |
| |
|
|||||||||||| |||| || |||||||||||||||||| |||| || ||||| || ||| ||| || ||| || ||||||||||| ||| | |||| | |
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| T |
4845796 |
ggttgaacttgattttcaccaacattgactctataaaccatctccaaagctttatcattacgaatttcgtattctctgttgtcaaagccaattaatttga |
4845697 |
T |
|
| Q |
127 |
aataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatt |
217 |
Q |
| |
|
||||||| ||| ||||| ||||||||||||| |||||||||||||| ||||| ||||| ||||| |||| ||| |||||| ||||||| |
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| T |
4845696 |
aataataatttaagtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggatt |
4845606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 181
Target Start/End: Original strand, 4667256 - 4667406
Alignment:
| Q |
31 |
gaacttgactttccccgacattgactctataaaccgtctctaacgctttgtcgttaagaactttgtagtccgtgttgtcaaagtcaagtgatttcaaata |
130 |
Q |
| |
|
||||||||||||| || || ||||||||||||||||||| | ||||||| |||| ||| | ||| || || |||||||||||||| || |||||| |
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| T |
4667256 |
gaacttgactttcaccaacgctgactctataaaccgtctccatagctttgttgttaggaatatggtattcattgctgtcaaagtcaagtaatgtcaaatg |
4667355 |
T |
|
| Q |
131 |
atattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacac |
181 |
Q |
| |
|
||| ||||||||| |||||||||||||||| |||||||| ||||||||||| |
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| T |
4667356 |
ataatttgggtcactgaggtttgtgtaatagagaaaagacggcatagacac |
4667406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 4644130 - 4644200
Alignment:
| Q |
139 |
ggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataa |
209 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||| |
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|
| T |
4644130 |
ggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataa |
4644200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 209
Target Start/End: Complemental strand, 18925501 - 18925344
Alignment:
| Q |
52 |
tgactctataaaccgtctctaacgctttgtcgttaagaactttgtagtccgtgttgtcaaagtcaagtgatttcaaataatattttgggtcattgaggtt |
151 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | | |||||| | | |||| |||| | ||||| | || |||| || |||| |||||||||||| |
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|
| T |
18925501 |
tgactctataaaccgtctctaacactttgtcactgctgattttgtatttcatgttttcaaggccaagtaactttaaatgatgatttgagtcattgaggtt |
18925402 |
T |
|
| Q |
152 |
tgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataa |
209 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| || ||||| || ||||| |||||| |
|
|
| T |
18925401 |
tgtgtaatagagaaaagaaggcatggacacgatctcaattccgttgatgaaagcataa |
18925344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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