View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_357 (Length: 243)
Name: NF10855A_low_357
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_357 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 341062 - 340820
Alignment:
| Q |
1 |
attggaatcaatgatttctcaactttgttgtgaatgatcttctcttgaaaagcttcaaagcgtctttgtttgaagagatattggagaagattcctattgt |
100 |
Q |
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| T |
341062 |
attggaatcaatgatttctcaactttgttgtgaattatcttctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctattgt |
340963 |
T |
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| Q |
101 |
atttccattgatctgaatctgtagtgaaaattcctaaaccaaaaggttcaaacatttcacgaaacaaatcacctttgacaaagttgtcaaagctcttgct |
200 |
Q |
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| T |
340962 |
atttccattgatctgaatctgtagtgaaaattcctaaaccaaaaggttcaaacatttcacgaaacaaatcacctttgacaaagttgtcaaagctcttgct |
340863 |
T |
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| Q |
201 |
catgatgtagtgaacattcaatggatcagttgtgataacacca |
243 |
Q |
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| T |
340862 |
catgatgtagtgaacattcaatggatcagttgtgataacacca |
340820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 337021 - 336789
Alignment:
| Q |
4 |
ggaatcaatgatttctcaactttgttgtgaatgatcttctcttgaaaagcttcaaagcgtctttgtttgaagagatattggagaagattcctattgtatt |
103 |
Q |
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| T |
337021 |
ggaatcaatgatttctcaactttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctattgtatt |
336922 |
T |
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| Q |
104 |
tccattgatctgaatctgtagtgaaaattcctaaaccaaaaggttcaaacatttcacgaaacaaatcacctttgacaaagttgtcaaagctcttgctcat |
203 |
Q |
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| T |
336921 |
tccattgatgtgaatctgtagtgaaaattcctaaaccaaaaggttggaacgtttcacgaaacctttcacctttctcaaaattgtcaaacctcttgctcat |
336822 |
T |
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| Q |
204 |
gatgtagtgaacattcaatggatcagttgtgat |
236 |
Q |
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| T |
336821 |
gatgtagtgaacattcaatggatcgtttgtgat |
336789 |
T |
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