View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_358 (Length: 243)
Name: NF10855A_low_358
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_358 |
 | |
|
| [»] scaffold0489 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 19995428 - 19995656
Alignment:
| Q |
6 |
atcaatgatgagacaagagttggtaatgnnnnnnnnnntcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagc |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || |||| |
|
|
| T |
19995428 |
atcaatgatgagacgagagttggtaatgaaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaatttgagc |
19995527 |
T |
|
| Q |
106 |
attcacaatgaggattttattgttataatttgattttgatattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtca |
205 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19995528 |
attcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttagtgttgagatgtca |
19995627 |
T |
|
| Q |
206 |
atttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
|| |||||||||||| ||||||| ||||| |
|
|
| T |
19995628 |
atctgaccattgtcaatggggattttgtt |
19995656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 44 - 234
Target Start/End: Complemental strand, 53355749 - 53355559
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
53355749 |
tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaattcgagcattcacaatgaggattttgttgttataatttgatttcg |
53355650 |
T |
|
| Q |
144 |
atattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
53355649 |
atattatcaataaaagtttagttgggactatgaacattgtggattttagtgttgagatgtcaatctgaccattgtcaatggggattttgtt |
53355559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 44 - 234
Target Start/End: Original strand, 55948345 - 55948535
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
55948345 |
tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaattcgagtattcacaatgaggattttgttgttataatttgattttg |
55948444 |
T |
|
| Q |
144 |
atattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||| |
|
|
| T |
55948445 |
atattatcaataaaagtttagttgggactatgaacattgtggattttagtgttgagatgtcaatctgaccattgtcaatggagattttgtt |
55948535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 44252295 - 44252068
Alignment:
| Q |
6 |
atcaatgatgagacaagagttggtaatgnnnnnnnnnntcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||| ||||||| ||||| | |
|
|
| T |
44252295 |
atcaatgatgagacaagagttggtaatgaaaaaaaaa-tcattctttaggttttttaatttgagaattttgtgaattttttcaatattgggaattcgatc |
44252197 |
T |
|
| Q |
106 |
attcacaatgaggattttattgttataatttgattttgatattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtca |
205 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44252196 |
attcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagctgagactatgaacattgtggattttagtgttgagatgtca |
44252097 |
T |
|
| Q |
206 |
atttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
|| |||||||||||| ||||||| ||||| |
|
|
| T |
44252096 |
atctgaccattgtcaatggggattttgtt |
44252068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 45 - 234
Target Start/End: Complemental strand, 39653829 - 39653640
Alignment:
| Q |
45 |
cattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttga |
144 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||||||||||||| |||| || || |||||||| ||||||||| ||| |||||||||||||||| ||| |
|
|
| T |
39653829 |
cattctttaggtttttcaatttggaagttttgtgaattttttcaatattgagaatttgagcattctcaatgaggactttgttgttataatttgattatga |
39653730 |
T |
|
| Q |
145 |
tattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
|||||||||||| | || |||| ||||||||||||||||||||||||||||||| |||||| |||||||| ||| ||||||| ||||| |
|
|
| T |
39653729 |
tattatcaataagaattttgttgggactatgaacattgtggattttagtgttgaggcgtcaatctgaccattatcaatggggattttgtt |
39653640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 44 - 234
Target Start/End: Original strand, 33733928 - 33734118
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33733928 |
tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaattcgagcattcacaatgaggattttgttgttataatttgattttg |
33734027 |
T |
|
| Q |
144 |
atattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
33734028 |
atattatcaataaaagtttagttgggactatgaacattgtggattttagtgttgagatgtcaatctgaccattgtcaatggggattttgtt |
33734118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 53528666 - 53528452
Alignment:
| Q |
6 |
atcaatgatgagacaagagttggtaatgnnnnnnnnnntcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagc |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
53528666 |
atcaatgatgagacgagagttggtaatgaaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaattcgagc |
53528567 |
T |
|
| Q |
106 |
attcacaatgaggattttattgttataatttgattttgatattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtca |
205 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53528566 |
attcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagctgggactatgaacattgtggattttagtgttgagatgtca |
53528467 |
T |
|
| Q |
206 |
atttgaccattgtca |
220 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
53528466 |
atctgaccattgtca |
53528452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 44 - 234
Target Start/End: Original strand, 31393038 - 31393228
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31393038 |
tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattggaaattcgagcattcacaatgaggattttgttgttataatttgattttg |
31393137 |
T |
|
| Q |
144 |
atattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
31393138 |
atattatcaataaaagtttagttgagactatgaacattgtggattttagtgttgagatgtcaatctgaccattgtcaatggggattttgtt |
31393228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 44 - 234
Target Start/End: Complemental strand, 45277057 - 45276867
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
45277057 |
tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaattcgagcattcacaatgaggattttgttgttataatttgatttcg |
45276958 |
T |
|
| Q |
144 |
atattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
45276957 |
atattatcaataaaattttagttgggactatgaacattgtggattttagtgttaagatgtcaatctgaccattgtcaatggggattttgtt |
45276867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 44 - 234
Target Start/End: Original strand, 8231002 - 8231192
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8231002 |
tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaattcgagcattcacaatgaggattttgttgttataatttgattttg |
8231101 |
T |
|
| Q |
144 |
atattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
|||||| ||||||||| ||| ||| |||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| ||| ||||| |
|
|
| T |
8231102 |
atattaacaataaaagtttatttgagactatgaacattgtgaattttagtgttgagatgtcaatctgaccattgtcaatggagattttgtt |
8231192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 44 - 226
Target Start/End: Original strand, 32882100 - 32882282
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32882100 |
tcattctttaggtttttcaattttagaattttgtgaattttttcaatattgggagttcgagcattcacaatgaggattttgttgttataatttgattttg |
32882199 |
T |
|
| Q |
144 |
atattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtgggg |
226 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
32882200 |
atattatcaataaaaaattagttcggactatgaacattgtggattttagtgttgagatgtcaatttgaccatagtcaatgggg |
32882282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 21716044 - 21716169
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
21716044 |
tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaattcgagcattcacaatgaggattttgttgttataatttgatttcg |
21716143 |
T |
|
| Q |
144 |
atattatcaataaaagcttagttgtg |
169 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
21716144 |
atattatcaataaaagtttagttgtg |
21716169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 44 - 234
Target Start/End: Complemental strand, 40029104 - 40028933
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
40029104 |
tcattctttaggtttttcaatttgagaattttgtgaattttt-caatattggaaattcgagcattcataatgaggattttgttgttataatttgattttg |
40029006 |
T |
|
| Q |
144 |
atattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || |||| ||||| |
|
|
| T |
40029005 |
atattatcaa------------------tatgaacattgtggattttagtgttgagatgtcaatctgaccattgtcaatgaggattttgtt |
40028933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 21716165 - 21716219
Alignment:
| Q |
180 |
ttgtggattttagtgttgagatgtcaatttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||| || ||||| |
|
|
| T |
21716165 |
ttgtggattttagtgttgagatgtcaatctgaccattgtcaatgggaattttgtt |
21716219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 44 - 234
Target Start/End: Complemental strand, 25264990 - 25264800
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
25264990 |
tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaattcgagcattcacaatgaggattttgttgttataatttgatttcg |
25264891 |
T |
|
| Q |
144 |
atattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| || ||||| |
|
|
| T |
25264890 |
atattatcaataaaagtttagttgggactatgaacattgtggattttagtgttgagatgtcaatctgaccattgtcaatgggaattttgtt |
25264800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 44 - 234
Target Start/End: Original strand, 33294836 - 33295026
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33294836 |
tcattctttaggtttttcaatttgagaattttgtgaatttttttaatattgggaattcgagcattcacaatgaggattttgttgttataatttgattttg |
33294935 |
T |
|
| Q |
144 |
atattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||| ||||| |
|
|
| T |
33294936 |
atattattaataaaagtttagttgggactatgaacattgtggattttagtgttgagatgttaatctgaccattatcaatggggattttgtt |
33295026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 44 - 234
Target Start/End: Complemental strand, 33258511 - 33258321
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
33258511 |
tcattctttaggtttttcaatttgagagttttgtgaattttttcaatattgggaattcgagcattcacaatgaggattttgttgttataatttgatttcg |
33258412 |
T |
|
| Q |
144 |
atattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
33258411 |
atattatcaataaaagtttagttgggactatgaacattgtggattttagtgttgagatgtcaatctgaccattgtcaatggggattttgtt |
33258321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 44 - 234
Target Start/End: Complemental strand, 33278683 - 33278493
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
33278683 |
tcattctttaggtttttcaatttgagagttttgtgaattttttcaatattgggaattcgagcattcacaatgaggattttgttgttataatttgatttcg |
33278584 |
T |
|
| Q |
144 |
atattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
33278583 |
atattatcaataaaagtttagttgggactatgaacattgtggattttagtgttgagatgtcaatctgaccattgtcaatggggattttgtt |
33278493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 7654633 - 7654860
Alignment:
| Q |
6 |
atcaatgatgagacaagagttggtaatgnnnnnnnnnntcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagc |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||| |||||||||||| |||||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
7654633 |
atcaatgatgagacgagagttggtaatgaaaaaaaaaatcattctttaggtttttcaatttaagaattttgtgaattttt-caatattgggaattcgagt |
7654731 |
T |
|
| Q |
106 |
attcacaatgaggattttattgttataatttgattttgatattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtca |
205 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7654732 |
attcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagctgggactatgaacattgtggattttagtgttgagatgtca |
7654831 |
T |
|
| Q |
206 |
atttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
|| |||||||||||| ||||||| ||||| |
|
|
| T |
7654832 |
atctgaccattgtcaatggggattttgtt |
7654860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 28920020 - 28920239
Alignment:
| Q |
6 |
atcaatgatgagacaagagttggtaatgnnnnnnnnnntcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagc |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||||||| |
|
|
| T |
28920020 |
atcaatgatgagacgagagttggtaatgaaaaaaaacatcattctttaggtttttcaatttgagaattttgtgaattttttcaatattggaaattcgagc |
28920119 |
T |
|
| Q |
106 |
attcacaatgaggattttattgttataatttgattttgatattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtca |
205 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28920120 |
attcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttag-tgggactatgaacattgtggattttagtgttgagatttca |
28920218 |
T |
|
| Q |
206 |
atttgaccattgtcagtgggg |
226 |
Q |
| |
|
|| ||| |||||||| ||||| |
|
|
| T |
28920219 |
atctgatcattgtcaatgggg |
28920239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 44 - 234
Target Start/End: Original strand, 36146326 - 36146515
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||| |||||||||||||||||| || |||||||||||||||| |
|
|
| T |
36146326 |
tcattctttaggtttttcaatttgagaattttgtgaattttt-caatattgggaattcgagtattcacaatgaggattttgttattataatttgattttg |
36146424 |
T |
|
| Q |
144 |
atattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
|||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
36146425 |
atattatcaataaaagtttagctgagactatgaacattgtggattttagtgttgagatgtcaatctgaccattgtcaatggggattttgtt |
36146515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 44 - 234
Target Start/End: Complemental strand, 19056937 - 19056747
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||| ||||| | || |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19056937 |
tcattctttaggtttttcaatttgagaattttttgaattttttcaatattggaaatttgagcattcacaatgaggattttgttgttataatttgattttg |
19056838 |
T |
|
| Q |
144 |
atattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
|||||||||||||||| |||| || |||| |||||||||| ||||||||||||||||||||||| |||||||| ||| |||| || ||||| |
|
|
| T |
19056837 |
atattatcaataaaagtttagctgggactgtgaacattgtagattttagtgttgagatgtcaatctgaccattatcaatgggaattttgtt |
19056747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 24088706 - 24088873
Alignment:
| Q |
55 |
gtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttgatattatcaat |
154 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| ||||||| ||| ||||||| |||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
24088706 |
gtttttcaattttggaattttcgtaattttttcaaaattgggaattcaagcattcttaatgaggatttttttgttataatttgattatgatattatcaat |
24088805 |
T |
|
| Q |
155 |
aaaagcttagttgtgac--tatgaacattgtggattttagtgttgagatgtcaatttgaccattgtca |
220 |
Q |
| |
|
|| || || ||| ||| |||| |||||||||||||| |||||||||||||||| || ||| ||||| |
|
|
| T |
24088806 |
aagagttttgttaggactatatggacattgtggattttggtgttgagatgtcaatctgtccactgtca |
24088873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 44 - 234
Target Start/End: Original strand, 1841156 - 1841346
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
1841156 |
tcattctttaggtttttcaatttgagaattttgtgaattgtttcaatattgggaattcgagcattcacaatgaggattttgttgttataattttattttg |
1841255 |
T |
|
| Q |
144 |
atattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| ||||| |
|
|
| T |
1841256 |
atattatcaataaaagtttagttgggactatgaacattgtggattttagtgttgagatgttaatctgaccattgtcaatggggattttgtt |
1841346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 44 - 228
Target Start/End: Complemental strand, 1418063 - 1417879
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
1418063 |
tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaattcgagcattcacagtgaggattttgttgttataatttgattttg |
1417964 |
T |
|
| Q |
144 |
atattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtggggat |
228 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
1417963 |
atattatcaataaaagtttatttaggactatgaacattgtggattttagtgttgagatgtcaatctgaccattgtcaatggggat |
1417879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 44 - 234
Target Start/End: Complemental strand, 25915346 - 25915155
Alignment:
| Q |
44 |
tcattctttaagttttt-caatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgatttt |
142 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
25915346 |
tcattctttaggttttttcaatttgagaattttgtgaattttttcaatattgggaatttgagcattcacaatgaggattttgttgttatgatttgatttt |
25915247 |
T |
|
| Q |
143 |
gatattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
25915246 |
gatattatcaataaaagtttagctgggactatgaacattgtggattttagtgttgagatgtcaatctgaccattgtcaatggggattttgtt |
25915155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 44 - 234
Target Start/End: Original strand, 30333418 - 30333606
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30333418 |
tcattctttaggtttttcaatttgagaattttgtgaattttt-caatattgggaattcgagcattcacaatgaggattttgttgttataatttgattttg |
30333516 |
T |
|
| Q |
144 |
atattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtcaatttgaccattgtcagtggggatattgtt |
234 |
Q |
| |
|
|||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| || ||||| |
|
|
| T |
30333517 |
atattatcaataaaagtttag-tgggactatgaacattgtggattttagtgttgagatgtcaatctgaccattgtcaatgggaattttgtt |
30333606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 6 - 211
Target Start/End: Original strand, 19083526 - 19083731
Alignment:
| Q |
6 |
atcaatgatgagacaagagttggtaatgnnnnnnnnnntcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagc |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
19083526 |
atcaatgatgagacgagagttggtaatgaaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaattcgagc |
19083625 |
T |
|
| Q |
106 |
attcacaatgaggattttattgttataatttgattttgatattatcaataaaagcttagttgtgactatgaacattgtggattttagtgttgagatgtca |
205 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19083626 |
attcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttatttatgactatgaacattgtggattttagtgttgagttgtca |
19083725 |
T |
|
| Q |
206 |
atttga |
211 |
Q |
| |
|
||||| |
|
|
| T |
19083726 |
ttttga |
19083731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0489 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0489
Description:
Target: scaffold0489; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 44 - 211
Target Start/End: Original strand, 6305 - 6474
Alignment:
| Q |
44 |
tcattctttaagtttttcaatttgagaattttgtgaattttttcaacattgggatttcgagcattcacaatgaggattttattgttataatttgattttg |
143 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6305 |
tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaattcgagcattcacaatgaggattttgttgttataatttgattttg |
6404 |
T |
|
| Q |
144 |
atattatcaataaaagctt--agttgtgactatgaacattgtggattttagtgttgagatgtcaatttga |
211 |
Q |
| |
|
||||||||||||||| || | || |||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
6405 |
atattatcaataaaaagtttaatttatgactatgaacattgtggattttagtgttgagttgtcattttga |
6474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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