View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_375 (Length: 242)
Name: NF10855A_low_375
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_375 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 30811460 - 30811678
Alignment:
| Q |
17 |
ttgatggctaaaatgaatgtgacaatcttacttagcaaggttattagtgatatgtcctacattcatgtattttgttgtgggctatggttatgccaataag |
116 |
Q |
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| T |
30811460 |
ttgatgaccaaaattaatgtgacaaacttacttagcaaggttattagtgatatgtcctacattcatgtattttgttgtgggctatggttatgccaataag |
30811559 |
T |
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| Q |
117 |
caccgttttacaatttgtacgggcactaatcctaaggtgcatgcaaaagagaaatatagataaaaacactcataacacgacctattcctattgccctctc |
216 |
Q |
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| T |
30811560 |
caccgttttacaatttgtactggcactaatcctaaggtgcatgcaaaagagaaatatagataaaaacactcataacacgacctattcctattgccctctc |
30811659 |
T |
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| Q |
217 |
atgacgactacaacaccaa |
235 |
Q |
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|||||||||||||| |||| |
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| T |
30811660 |
atgacgactacaactccaa |
30811678 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 35375136 - 35375092
Alignment:
| Q |
146 |
tcctaaggtgcatgcaaa-agagaaatatagataaaaacactcat |
189 |
Q |
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| T |
35375136 |
tcctaaggtgcatgcaaatagagaaatatacataaaaacattcat |
35375092 |
T |
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