View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_377 (Length: 241)
Name: NF10855A_low_377
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_377 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 35972412 - 35972645
Alignment:
| Q |
1 |
agagtctggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaaatttcatggcaaggcatctagatccaaaaaacaggcagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35972412 |
agagtctggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaaatttcatggcaaggcatctagatccaaaaaacaggcagat |
35972511 |
T |
|
| Q |
101 |
attgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcgttcagtttatttttctttcattcataagaatcacaaacaactttggcctct |
200 |
Q |
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| T |
35972512 |
attgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcattcagtttttttttctttcattcataagaatcacaaacaactttggcctct |
35972611 |
T |
|
| Q |
201 |
attattacgttgcctcgtcggtgccgaacaccaa |
234 |
Q |
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| T |
35972612 |
attattacgttgcctcgtcggtgccgaacaccaa |
35972645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 35952459 - 35952654
Alignment:
| Q |
1 |
agagtctggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaaatttcatggcaaggcatctagatccaaaaaacaggcagat |
100 |
Q |
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|||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
35952459 |
agagtctggttctcttcatatgcgaacttatttctcaactgtggaagtagagggattgaaatttcatggaaaggcatctagatccaaaaaacaagcagat |
35952558 |
T |
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| Q |
101 |
attgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcgttcagtttatttttctttcattcataagaatcacaaacaactttggc |
196 |
Q |
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| T |
35952559 |
attgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcatgcacttgatttttctttcattcataagaatcagaaacaactttggc |
35952654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 6 - 181
Target Start/End: Original strand, 35979567 - 35979742
Alignment:
| Q |
6 |
ctggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaaatttcatggcaaggcatctagatccaaaaaacaggcagatattga |
105 |
Q |
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||||| |||||||||||||||||| || ||||||||| |||||||| ||| || |||||||||| ||||||||||| ||||||||| ||||||| ||| |
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| T |
35979567 |
ctggtcctcctcatatgccaacttttttctcaactgttgaagtagaaggcgtggaatttcatggaaaggcatctagttccaaaaaagaggcagaatatga |
35979666 |
T |
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| Q |
106 |
tgctgcaaagattgcttacattgccttaaaagagtgtaagttcgttcagtttatttttctttcattcataagaatc |
181 |
Q |
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| T |
35979667 |
tgctgcaaagattgcttacaaggccttaaaagatggtaagtttattcacttgattttgctttcatgcataagaatc |
35979742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 35956512 - 35956658
Alignment:
| Q |
7 |
tggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaaatttcatggcaaggcatctagatccaaaaaacaggcagatattgat |
106 |
Q |
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|||| |||||||||||||||||| || |||||||||||||||||||||| | ||||||||| |||||||||| ||||||||| ||||||| ||| |
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| T |
35956512 |
tggtcctcctcatatgccaacttttttctcaactgtggaagtagagggcatcggatttcatggaaaggcatctaaatccaaaaacaaggcagaagaagat |
35956611 |
T |
|
| Q |
107 |
gctgcaaagattgcttacattgccttaaaagagtgtaagttcgttca |
153 |
Q |
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| T |
35956612 |
gccgcaaagattgcttacatcaccttaaaagagtgtaagttcattca |
35956658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 35969453 - 35969585
Alignment:
| Q |
6 |
ctggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaaatttcatggcaaggcatctagatccaaaaaacaggcagatattga |
105 |
Q |
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||||||| | |||||||||||||| || |||| |||| ||||||||||| || | |||||||| || |||||||||||||||||| ||||||| ||| |
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| T |
35969453 |
ctggttcccttcatatgccaacttttttctcagctgttgaagtagagggtgtggagtttcatggaaatgcatctagatccaaaaaagaggcagaacgtga |
35969552 |
T |
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| Q |
106 |
tgctgcaaagattgcttacattgccttaaaaga |
138 |
Q |
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| T |
35969553 |
tgctgcaaagattgcttacaaggccataaaaga |
35969585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 35974469 - 35974542
Alignment:
| Q |
75 |
catctagatccaaaaaacaggcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttc |
148 |
Q |
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|||||||||||| |||| ||||||| |||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
35974469 |
catctagatccataaaagaggcagaacatgatgctgaaaagattgcttacattaccttaaaagagtgtaagttc |
35974542 |
T |
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