View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_380 (Length: 241)
Name: NF10855A_low_380
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_380 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 1831845 - 1831654
Alignment:
| Q |
27 |
agggtcaactagctccttatcttcattctttacacacctaaggt-cacttcagatggtgtagatgcgggattgaagcccatcatgttgaatctctttaaa |
125 |
Q |
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| T |
1831845 |
agggtcaactagctcttcatcttcattctttacaagcttaagattcacttcagatggtgtagatgcaggattgaagcccatcatgttgaatctctttaaa |
1831746 |
T |
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| Q |
126 |
atatttgtagcatatttcttctggtgcaccactaaacattatgaagttttagtgaactccatcccaaggaaatattttaactttcccaaatc |
217 |
Q |
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| T |
1831745 |
atatttgtagcatatttcttctggtgcatcactaaacattctgaagttttagtgaattccattccagggaaatatgttaactttcccaaatc |
1831654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 9817073 - 9816969
Alignment:
| Q |
111 |
ttgaatctctttaaaatatttgtagcatatttcttctggtgcaccactaaacattatgaagttttagtgaactccatcccaaggaaatattttaactttc |
210 |
Q |
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| T |
9817073 |
ttgaatctcttcaaaatatctattgcatatttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaccttc |
9816974 |
T |
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| Q |
211 |
ccaaa |
215 |
Q |
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| T |
9816973 |
ccaaa |
9816969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 211
Target Start/End: Complemental strand, 30065339 - 30065210
Alignment:
| Q |
82 |
gtgtagatgcgggattgaagcccatcatgttgaatctctttaaaatatttgtagcatatttcttctggtgcaccactaaacattatgaagttttagtgaa |
181 |
Q |
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| T |
30065339 |
gtgtagatgcaggattgcagttcaacatgttgaacctcttgagaatatcagaagcatacttcttctgatgcttaactagaccttcagaagttttagtgaa |
30065240 |
T |
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| Q |
182 |
ctccatcccaaggaaatattttaactttcc |
211 |
Q |
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| T |
30065239 |
ttccataccaaggaagtatgttaactttcc |
30065210 |
T |
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