View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_382 (Length: 241)
Name: NF10855A_low_382
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_382 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 29 - 222
Target Start/End: Complemental strand, 38145410 - 38145217
Alignment:
| Q |
29 |
cacttcttactcttagatggattccaagtttcttggagcaaattacggctgcttggacatgggaatcttgggagggtgtgaatatgaattcgggtttcgg |
128 |
Q |
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| T |
38145410 |
cacttcttactcttagatggattccaagtttcttggagcaaattacggctgcttggacatgggaatcttgggagggtgtgaatatgaattcgggtttcgg |
38145311 |
T |
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| Q |
129 |
tgtagatggtgccaaacaccttaggttcattgctaaggaatcaaggatggttgcgaatgaaggttcatttggagtgtaaattgttgtatgaaat |
222 |
Q |
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| T |
38145310 |
tgtagatggtgccaaacaccttaggttcattgctaaggaatcaaggatggttgcgaatgaaggttcatttggagtgtaaattgttgtatgaaat |
38145217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 11787410 - 11787533
Alignment:
| Q |
29 |
cacttcttactcttagatggattccaagtttcttggagcaaattacggctgcttggacatgggaatcttgggagggtgtgaatatgaattcgggtttcgg |
128 |
Q |
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| T |
11787410 |
cacttcttactcttagatgaataccaagtttctttgaacaagtaacagctacttggacatgtgaatcggttaagggtgtgaatatgaattcgggttttgg |
11787509 |
T |
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| Q |
129 |
tgtagatggtgccaaacaccttag |
152 |
Q |
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| T |
11787510 |
agcagaaggtaccaaataccttag |
11787533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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