View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_383 (Length: 241)
Name: NF10855A_low_383
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_383 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 12045208 - 12045067
Alignment:
| Q |
78 |
tggacaaatatcaccaaaataaaaattaatagaacaaatgttgtgagtgacaccaacctagatctcaaccaaaaagcacaatagcgttattccgtcacgg |
177 |
Q |
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| T |
12045208 |
tggacaaatatcgccaaaataaaaattaatagaacaaatgttgtgagtgacaccaacctagatctcaaccaaaaagcacaatagcgttattccgtcacgg |
12045109 |
T |
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| Q |
178 |
tggaagtgatttacacctttatcaacctcctcccaagttgta |
219 |
Q |
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| T |
12045108 |
tggaagtgatttacacctttatcaacctcctcccaagttgta |
12045067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 12045242 - 12045207
Alignment:
| Q |
14 |
gagaagaagcacatgagatgagagggaggaacagtg |
49 |
Q |
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| T |
12045242 |
gagaagaagcacatgagatgagagggaggaacagtg |
12045207 |
T |
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