View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_384 (Length: 241)
Name: NF10855A_low_384
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_384 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 14088523 - 14088304
Alignment:
| Q |
7 |
atcaatgttaccgtctacagtggcactatctactacggaggctgaatatatggccgtagcagaagcagtaaaggaagcattgtggctgagaggtcttcta |
106 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14088523 |
atcaatgttacagtctacagtggcactatctactacggaggctgaatatatggccgtagcagaagccgtaaaggaagcattgtggctgagaggtcttcta |
14088424 |
T |
|
| Q |
107 |
ggtgatttgggtgttacgcaagaacgtgtgagtctgatgtgtgatagtcaaagtgcgattcacttggctaagaatcaggttcatcatgctcggaccaagc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14088423 |
ggtgatttgggtgttacgcaagaacgtgtgagtctgatgtgtgatagtcaaagtgcgattcacttggctaagaatcaggttcatcatgctcggaccaagc |
14088324 |
T |
|
| Q |
207 |
atatcgatgtaaggtatcat |
226 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
14088323 |
atatcgatgtaaggtatcat |
14088304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 33698172 - 33698391
Alignment:
| Q |
7 |
atcaatgttaccgtctacagtggcactatctactacggaggctgaatatatggccgtagcagaagcagtaaaggaagcattgtggctgagaggtcttcta |
106 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33698172 |
atcaatgttacaatctacagtggcactatctactacggaggctgaatatatggccgtagcagaagcagtaaaggaagcattgtggctgagaggtcttcta |
33698271 |
T |
|
| Q |
107 |
ggtgatttgggtgttacgcaagaacgtgtgagtctgatgtgtgatagtcaaagtgcgattcacttggctaagaatcaggttcatcatgctcggaccaagc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33698272 |
ggtgatttgggtgttacgcaagaacgtgtgagtctgatgtgtgatagtcaaagtgcgattcacttggctaagaatcaggttcatcatgctcggaccaagc |
33698371 |
T |
|
| Q |
207 |
atatcgatgtaaggtatcat |
226 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
33698372 |
atatcgatgtaaggtatcat |
33698391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 24877253 - 24877034
Alignment:
| Q |
7 |
atcaatgttaccgtctacagtggcactatctactacggaggctgaatatatggccgtagcagaagcagtaaaggaagcattgtggctgagaggtcttcta |
106 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
24877253 |
atcaatgttacagtctacagtggcactatctactacggaggctgaatatatggctgtagcagaaggagtaaaggaagtattgtggctgagaggtcttcta |
24877154 |
T |
|
| Q |
107 |
ggtgatttgggtgttacgcaagaacgtgtgagtctgatgtgtgatagtcaaagtgcgattcacttggctaagaatcaggttcatcatgctcggaccaagc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24877153 |
ggtgatttgggtgttacgcaagaacgtgtgagtctgatgtgtgatagtcaaagtgcgattcacttggctaagaatcaggttcatcatgctcggaccaagc |
24877054 |
T |
|
| Q |
207 |
atatcgatgtaaggtatcat |
226 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
24877053 |
atatcgatgtaaggtatcat |
24877034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 9953257 - 9953478
Alignment:
| Q |
7 |
atcaatgttaccgtctacagtggcactatctactacggaggctgaatatatggccgtagcagaagcagtaaaggaagcattgtggctgaga--ggtcttc |
104 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| |
|
|
| T |
9953257 |
atcaatgttatagtctacagtggcactatctactacggaggccgaatatatggccgtagcagaaggagtaaaggaaacattgtggctgagagaggtcttc |
9953356 |
T |
|
| Q |
105 |
taggtgatttgggtgttacgcaagaacgtgtgagtctgatgtgtgatagtcaaagtgcgattcacttggctaagaatcaggttcatcatgctcggaccaa |
204 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9953357 |
taggtgatttgggtgctacacaagaacgtgtgagtctgatgtgtgatagtcaaagtgtgattcacttggctaagaatcaggttcatcatgctcagaccaa |
9953456 |
T |
|
| Q |
205 |
gcatatcgatgtaaggtatcat |
226 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
9953457 |
gcatatcgatgtaaggtatcat |
9953478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 46457962 - 46458168
Alignment:
| Q |
7 |
atcaatgttaccgtctacagtggcactatctactacggaggctgaatatatggccgtagcagaagcagtaaaggaagcattgtggctgagaggtcttcta |
106 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46457962 |
atcaatgttacagtctacagtggcactatctactacggaagccgaatatatggccgtagcaaaaggagtaaaggaagcattgtggctgagaggtcttcta |
46458061 |
T |
|
| Q |
107 |
ggtgatttgggtgttacgcaagaacgtgtgagtctgatgtgtgatagtcaaagtgcgattcacttggctaagaatcaggttcatcatgctcggaccaagc |
206 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46458062 |
ggtgatttgggtgttacgcaaga-------------atgtgtgatagtcaaagtgcgattcacttggctaagaatcaggttcatcatgctccgaccaagc |
46458148 |
T |
|
| Q |
207 |
atatcgatgtaaggtatcat |
226 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
46458149 |
atatcgatgtaaggtatcat |
46458168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University