View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_386 (Length: 241)

Name: NF10855A_low_386
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_386
NF10855A_low_386
[»] chr7 (11 HSPs)
chr7 (1-238)||(35939218-35939459)
chr7 (1-136)||(35977335-35977470)
chr7 (1-136)||(35998747-35998882)
chr7 (1-136)||(35946672-35946807)
chr7 (9-136)||(35957888-35958015)
chr7 (1-143)||(32727463-32727605)
chr7 (1-85)||(36217707-36217791)
chr7 (1-135)||(35981901-35982035)
chr7 (1-135)||(36003313-36003447)
chr7 (10-85)||(36221698-36221773)
chr7 (48-81)||(35954985-35955018)
[»] chr1 (2 HSPs)
chr1 (1-138)||(18125600-18125737)
chr1 (1-138)||(18117947-18118084)
[»] chr2 (1 HSPs)
chr2 (4-146)||(26328679-26328821)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 35939218 - 35939459
Alignment:
Q  1 caaatctttcaactcaatccattttgaacgatcagc----attccatatggcatctaacacgagtaaaaacttttgaccagaaagtttagatctcatacg 96  Q
    |||||||||||||||||||||||||||||||||| |    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35939218 caaatctttcaactcaatccattttgaacgatcatccatcattccatatgtcatctaacacgagtaaaaacttttgaccagaaagtttagatctcatacg 35939317  T
Q  97 acttacaagcagcacaatatctaagttgttaatgttttcttgctgagaaaaactaaccgttggagttggactagaagtaaatgtggaagcgaagcccgag 196  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35939318 acttacaagctgcacaatatctaagttgttaatgttttcttgctgagaaaaactaaccgttggagttggactagaagtaaatgtggaagcgaagcccgag 35939417  T
Q  197 ttgattattttaataattatctgcctgatgtccatctcattg 238  Q
    ||||||||||||||||||||||||||||| || | |||||||    
T  35939418 ttgattattttaataattatctgcctgatatcaaactcattg 35939459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 35977335 - 35977470
Alignment:
Q  1 caaatctttcaactcaatccattttgaacgatcagcattccatatggcatctaacacgagtaaaaacttttgaccagaaagtttagatctcatacgactt 100  Q
    |||||||||||| |||| ||| |||| ||||||| ||||||||| | |||||||||||| ||||||||||||||||||||||||   ||| | |||||||    
T  35977335 caaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccagaaagtttttgtctgagacgactt 35977434  T
Q  101 acaagcagcacaatatctaagttgttaatgttttct 136  Q
    || ||  ||||||||||||||||||| |||||||||    
T  35977435 actagttgcacaatatctaagttgttgatgttttct 35977470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 35998747 - 35998882
Alignment:
Q  1 caaatctttcaactcaatccattttgaacgatcagcattccatatggcatctaacacgagtaaaaacttttgaccagaaagtttagatctcatacgactt 100  Q
    |||||||||||| |||| ||| |||| ||||||| ||||||||| | |||||||||||| ||||||||||||||||||||||||   ||| | |||||||    
T  35998747 caaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccagaaagtttttgtctgagacgactt 35998846  T
Q  101 acaagcagcacaatatctaagttgttaatgttttct 136  Q
    || ||  ||||||||||||||||||| |||||||||    
T  35998847 actagttgcacaatatctaagttgttgatgttttct 35998882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 35946672 - 35946807
Alignment:
Q  1 caaatctttcaactcaatccattttgaacgatcagcattccatatggcatctaacacgagtaaaaacttttgaccagaaagtttagatctcatacgactt 100  Q
    |||||||||||| |||| ||| |||| ||||||| ||||||||| | |||||||||||| ||||||||||||||||||||||||   ||| | |||||||    
T  35946672 caaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccagaaagtttttgtcttagacgactt 35946771  T
Q  101 acaagcagcacaatatctaagttgttaatgttttct 136  Q
    || ||  |||||||||||||||||||  ||||||||    
T  35946772 actagttgcacaatatctaagttgttggtgttttct 35946807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 35957888 - 35958015
Alignment:
Q  9 tcaactcaatccattttgaacgatcagcattccatatggcatctaacacgagtaaaaacttttgaccagaaagtttagatctcatacgacttacaagcag 108  Q
    |||| |||| ||| |||| ||||||| ||||||||| | |||||||||| | ||||||||||||||||||||||||   | | | ||||||||| ||| |    
T  35957888 tcaattcaagccactttgcacgatcatcattccatacgtcatctaacacaactaaaaacttttgaccagaaagtttttgtttgagacgacttactagctg 35957987  T
Q  109 cacaatatctaagttgttaatgttttct 136  Q
    |||||||||||||||||| |||||||||    
T  35957988 cacaatatctaagttgttgatgttttct 35958015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 32727463 - 32727605
Alignment:
Q  1 caaatctttcaactcaatccattttgaacgatcagcattccatatggcatctaacacgagtaaaaacttttgaccagaaagtttagatctcatacgactt 100  Q
    ||||||| |||||||||||||||||| ||||||| ||||||||||  | ||||  || || |||||||| ||||||| |||||||  |||   |||||||    
T  32727463 caaatctatcaactcaatccattttgcacgatcatcattccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactt 32727562  T
Q  101 acaagcagcacaatatctaagttgttaatgttttcttgctgag 143  Q
       ||| || ||||||| |||||||| ||||||||||| ||||    
T  32727563 tgtagctgctcaatatcaaagttgttgatgttttcttggtgag 32727605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 36217791 - 36217707
Alignment:
Q  1 caaatctttcaactcaatccattttgaacgatcagcattccatatggcatctaacacgagtaaaaacttttgaccagaaagttta 85  Q
    |||||||| ||||||||||||||||| ||||||| |||||||||   |||||| |||||| | ||||||||| ||||| ||||||    
T  36217791 caaatcttccaactcaatccattttgcacgatcatcattccatacatcatctagcacgaggataaacttttggccagatagttta 36217707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 35981901 - 35982035
Alignment:
Q  1 caaatctttcaactcaatccattttgaacgatcagcattccatatggcatctaacacgagtaaaaacttttgaccagaaagtttagatctcatacgactt 100  Q
    |||||||||||||||||||||||||| ||||||| ||||||  |   |||| ||||| |||||||||||||| |  |||||||||  ||| | |||| ||    
T  35981901 caaatctttcaactcaatccattttgcacgatcatcattccgcacatcatccaacacaagtaaaaacttttgtctggaaagtttatgtcttagacgagtt 35982000  T
Q  101 acaagcagcacaatatctaagttgttaatgttttc 135  Q
       ||  || |||||||||||||||||| ||||||    
T  35982001 tgtagttgctcaatatctaagttgttaaggttttc 35982035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 36003313 - 36003447
Alignment:
Q  1 caaatctttcaactcaatccattttgaacgatcagcattccatatggcatctaacacgagtaaaaacttttgaccagaaagtttagatctcatacgactt 100  Q
    |||||||||||||||||||||||||| ||||||| ||||||  |   |||| ||||| |||||||||||||| |  |||||||||  ||| | |||| ||    
T  36003313 caaatctttcaactcaatccattttgcacgatcatcattccgcacatcatccaacacaagtaaaaacttttgtctggaaagtttatgtcttagacgagtt 36003412  T
Q  101 acaagcagcacaatatctaagttgttaatgttttc 135  Q
       ||  || |||||||||||||||||| ||||||    
T  36003413 tgtagttgctcaatatctaagttgttaaggttttc 36003447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 36221773 - 36221698
Alignment:
Q  10 caactcaatccattttgaacgatcagcattccatatggcatctaacacgagtaaaaacttttgaccagaaagttta 85  Q
    ||||||||||||||||| ||| ||| ||||||||||  ||||||  | ||| | ||||||||||||||||||||||    
T  36221773 caactcaatccattttgcacggtcatcattccatatatcatctaggatgaggataaacttttgaccagaaagttta 36221698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 35954985 - 35955018
Alignment:
Q  48 catctaacacgagtaaaaacttttgaccagaaag 81  Q
    ||||||||||||||||||| ||||||||||||||    
T  35954985 catctaacacgagtaaaaagttttgaccagaaag 35955018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 18125600 - 18125737
Alignment:
Q  1 caaatctttcaactcaatccattttgaacgatcagcattccatatggcatctaacacgagtaaaaacttttgaccagaaagtttagatctcatacgactt 100  Q
    ||||||||||||||| ||||| |||| ||||||| |||||||||   |||||||||| ||||||||||||||||  |||||| |   | ||| | |||||    
T  18125600 caaatctttcaactcgatccactttgcacgatcatcattccatacatcatctaacacaagtaaaaacttttgacttgaaagtgtttgtttcagaagactt 18125699  T
Q  101 acaagcagcacaatatctaagttgttaatgttttcttg 138  Q
    || ||  ||||||||||||||||| | |||||||||||    
T  18125700 actagttgcacaatatctaagttgatgatgttttcttg 18125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 18117947 - 18118084
Alignment:
Q  1 caaatctttcaactcaatccattttgaacgatcagcattccatatggcatctaacacgagtaaaaacttttgaccagaaagtttagatctcatacgactt 100  Q
    ||||||||||||||| |||||||||  || |||| ||||||||||  |||||||||| ||||||||| ||| |||| ||||||||  ||||| |||||||    
T  18117947 caaatctttcaactcgatccattttacacaatcatcattccatatatcatctaacacaagtaaaaaccttttaccataaagtttacgtctcagacgactt 18118046  T
Q  101 acaagcagcacaatatctaagttgttaatgttttcttg 138  Q
       ||| || ||||||| || | ||| |||||||||||    
T  18118047 tgtagctgctcaatatcaaaatggtttatgttttcttg 18118084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 26328821 - 26328679
Alignment:
Q  4 atctttcaactcaatccattttgaacgatcagcattccatatggcatctaacacgagtaaaaacttttgaccagaaagtttagatctcatacgacttaca 103  Q
    ||||||||||||||||||||||||||| | | ||| ||||||  ||||||| ||||||| |||||||| ||| ||||| |||  ||| | |||||| ||     
T  26328821 atctttcaactcaatccattttgaacggttatcatcccatatatcatctaagacgagtacaaactttttacctgaaagcttatgtctaagacgactcact 26328722  T
Q  104 agcagcacaatatctaagttgttaatgttttcttgctgagaaa 146  Q
    |   || ||||||| ||||  | |||||||||||| |||||||    
T  26328721 aattgctcaatatcaaagtgttcaatgttttcttggtgagaaa 26328679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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