View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_390 (Length: 240)
Name: NF10855A_low_390
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_390 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 38567083 - 38566857
Alignment:
| Q |
1 |
tggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaaa |
100 |
Q |
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| T |
38567083 |
tggacaaagtggaagtggaaagtcgacaattatcagtttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaaa |
38566984 |
T |
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| Q |
101 |
gaatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatacggtaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38566983 |
gaatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatatggtaaag |
38566884 |
T |
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| Q |
201 |
atggagcaacgattgaagaaataagat |
227 |
Q |
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| T |
38566883 |
atggagcaacgattgaagagataagat |
38566857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 38525958 - 38525732
Alignment:
| Q |
1 |
tggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaaa |
100 |
Q |
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| T |
38525958 |
tggacaaagtggaagtggaaagtccacagttattagtttggtagaaagattctatgatccacaggccggtgaagtacttatcgatggaattaacatgaaa |
38525859 |
T |
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| Q |
101 |
gaatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatacggtaaag |
200 |
Q |
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| T |
38525858 |
gaacttcagcttaggtggatcagagggaaaattggtcttgtcagccaggagccagtgttatttgcatccagcattaaggataacattgcatatggtaaag |
38525759 |
T |
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| Q |
201 |
atggagcaacgattgaagaaataagat |
227 |
Q |
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|||||||||| |||||||||||||||| |
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| T |
38525758 |
atggagcaacaattgaagaaataagat |
38525732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 51199481 - 51199554
Alignment:
| Q |
5 |
caaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttct |
78 |
Q |
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| T |
51199481 |
caaagtgggagtggaaaatccacagttgtcagtttgatagagagattttatgatccacaggctggtgaagttct |
51199554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 51212627 - 51212687
Alignment:
| Q |
5 |
caaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacagg |
65 |
Q |
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|||||||| |||||||| || ||| | || |||||| |||||||||| ||||||||||||| |
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| T |
51212627 |
caaagtgggagtggaaaatcaacagtgataaatttgatagagagattttatgatccacagg |
51212687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 49737390 - 49737314
Alignment:
| Q |
2 |
ggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttct |
78 |
Q |
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||||||||||| ||||| || ||||| |||| | |||| |||||||||| ||||||||||||| |||||| |||| |
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| T |
49737390 |
ggacaaagtgggagtgggaaatcgacggttattagtttgatagagagattttatgatccacagggtggtgaaattct |
49737314 |
T |
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