View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_396 (Length: 239)
Name: NF10855A_low_396
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_396 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 17451309 - 17451076
Alignment:
| Q |
1 |
ggaggaagacaaaacaagcacaaccaaacaacttaactaaattataatcaggtgtagtgtggtaaagacgctcaaaaggagagatattaccaaagataga |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17451309 |
ggaggaggacaaaacaagcacaaccaaacaccttaagtaaattataatcaggtgtagtatggtaaagacgctcaaaaggagagatattaccaaagataga |
17451210 |
T |
|
| Q |
101 |
tgaaggaagacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagcatggcacggacagagtca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17451209 |
tgaaggaagacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagcatggcacggacagagtca |
17451110 |
T |
|
| Q |
201 |
agaatgtgacgatgttttctctcagcactaccat |
234 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
17451109 |
agaatgtgacgatgttttctctcagcacgaccat |
17451076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 51 - 234
Target Start/End: Complemental strand, 14825974 - 14825791
Alignment:
| Q |
51 |
ggtgtagtgtggtaaagacgctcaaaaggagagatattaccaaagatagatgaaggaagacgattgataatgtggacagcagtaagagaagcttcacccc |
150 |
Q |
| |
|
||||||||||| || ||||||||||| || |||| |||||||| || |||||| ||||||||||| |||||||||||| |||| ||| | ||||||| || |
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|
| T |
14825974 |
ggtgtagtgtgatatagacgctcaaagggtgagacattaccaaggacagatgagggaagacgattaataatgtggacaacagttagacatgcttcacacc |
14825875 |
T |
|
| Q |
151 |
aagcacgttcaggacaagaggctgagataagcatggcacggacagagtcaagaatgtgacgatgttttctctcagcactaccat |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||| ||||| |
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|
| T |
14825874 |
aagcacgttcaggacaagaggctgagataagcatggcacgaacagaatcaagaatgggacgatgctttctctcagcacgaccat |
14825791 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 182
Target Start/End: Original strand, 5241786 - 5241965
Alignment:
| Q |
3 |
aggaagacaaaacaagcacaaccaaacaacttaactaaattataatcaggtgtagtgtggtaaagacgctcaaaaggagagatattaccaaagatagatg |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| | | | |||||||| ||||||||| | |||||| ||||||||||||||| |||||||| | || | |
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|
| T |
5241786 |
aggaggacaaaacaagcacaaccaaacaccttgagtgatttataatctggtgtagtgagataaagatgctcaaaaggagagacgttaccaaatacagcgg |
5241885 |
T |
|
| Q |
103 |
aaggaagacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagc |
182 |
Q |
| |
|
|||| |||| || || || |||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
5241886 |
aagggagacagtttatcatatggacagcggtaagagcagcttcaccccaagcgcgttttggacaagaggctgagataagc |
5241965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 24432260 - 24432027
Alignment:
| Q |
1 |
ggaggaagacaaaacaagcacaaccaaacaacttaactaaattataatcaggtgtagtgtggtaaagacgctcaaaaggagagatattaccaaagataga |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24432260 |
ggaggaggacaaaacaagcacaaccaaacaccttaagtaaattataatcaggtgtagtatggtaaagacgctcaaaaggagagatattaccaaagataga |
24432161 |
T |
|
| Q |
101 |
tgaaggaagacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagcatggcacggacagagtca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
24432160 |
tgaaggaagacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagcatggcacggacaaagtca |
24432061 |
T |
|
| Q |
201 |
agaatgtgacgatgttttctctcagcactaccat |
234 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
24432060 |
agaatgtgacgatgttttctctcagcacgaccat |
24432027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 29991115 - 29990892
Alignment:
| Q |
3 |
aggaagacaaaacaagcacaaccaaacaacttaactaaattataatcaggtgtagtgtggtaaagacgctcaaaaggagagatattaccaaagatagatg |
102 |
Q |
| |
|
|||| ||||||||| ||||||||||||| ||||| | | |||||||| ||||||||| | |||||||||||||||||||||| |||||||| || | | |
|
|
| T |
29991115 |
aggaggacaaaacacgcacaaccaaacaccttaagtgatttataatctggtgtagtgagataaagacgctcaaaaggagagacattaccaaggacataat |
29991016 |
T |
|
| Q |
103 |
aaggaagacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagcatggcacggacagagtcaag |
202 |
Q |
| |
|
|||| ||| ||||||| || |||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||| ||| ||| |||||||| |
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|
| T |
29991015 |
aagggagatgattgattatatggacagcagtaagagcagcttcaccccaagcacgttctggacaagaggccgagataagcatgacacagactgagtcaag |
29990916 |
T |
|
| Q |
203 |
aatgtgacgatgttttctctcagc |
226 |
Q |
| |
|
||||| | |||| ||||||||||| |
|
|
| T |
29990915 |
aatgtaatgatgctttctctcagc |
29990892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 16503149 - 16502931
Alignment:
| Q |
8 |
gacaaaacaagcacaaccaaacaacttaactaaattataatcaggtgtagtgtggtaaagacgctcaaaaggagagatattaccaaagatagatgaagga |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | |||||||| |||||||| |||||||||||||||||||||| |||||||| || ||| |||| |
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|
| T |
16503149 |
gacaaaacaagcacaaccaaacaccttaagtgagttataatcttgtgtagtgaaataaagacgctcaaaaggagagacattaccaaggacagaggaagag |
16503050 |
T |
|
| Q |
108 |
agacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagcatggcacggacagagtcaagaatgt |
207 |
Q |
| |
|
|| |||||||| || |||||||| ||||||| |||||||||||||| ||||| | ||| |||||||||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
16503049 |
aggcgattgattatatggacagcggtaagagcggcttcaccccaagcgcgttctgaacatgaggctgagatatgcatggcacagactgagtcaagaatgt |
16502950 |
T |
|
| Q |
208 |
gacgatgttttctctcagc |
226 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
16502949 |
aacgatgctttctctcagc |
16502931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 234
Target Start/End: Original strand, 53017059 - 53017290
Alignment:
| Q |
3 |
aggaagacaaaacaagcacaaccaaacaacttaactaaattataatcaggtgtagtgtggtaaagacgctcaaaaggagagatattaccaaagatagatg |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| | | ||||||| ||||||||| | |||||||||||||||||||||| |||||||| || ||| | |
|
|
| T |
53017059 |
aggaggacaaaacaagcacaaccaaacaccttaagtgagttataatttggtgtagtgagataaagacgctcaaaaggagagacattaccaaggacagagg |
53017158 |
T |
|
| Q |
103 |
aaggaagacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagcatggcacggacagagtcaag |
202 |
Q |
| |
|
|||| ||||||||||| || ||||| || ||||||| |||||| ||||||| |||| ||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
53017159 |
aagggagacgattgattatatggactgcggtaagagcggcttcatcccaagcgtgttctggacacgaggctgagataagcatggcacggactgagtcaag |
53017258 |
T |
|
| Q |
203 |
aatgtgacgatgttttctctcagcactaccat |
234 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| |
|
|
| T |
53017259 |
aatgtgacgatgctttctctcagcacgaccat |
53017290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 234
Target Start/End: Original strand, 20669989 - 20670221
Alignment:
| Q |
3 |
aggaagacaaaacaagcacaaccaaacaacttaactaaattataatcaggtgtagtgtggtaaagacgctcaaaaggagagatattaccaaagatagatg |
102 |
Q |
| |
|
|||| |||||||||| |||||| ||||| ||||| | | |||||||| ||||||||| | ||||| |||||| ||||||| |||||||| || ||| | |
|
|
| T |
20669989 |
aggaggacaaaacaatcacaacaaaacaccttaagtgatttataatccggtgtagtgagataaagtttctcaaagggagagacattaccaaggacagagg |
20670088 |
T |
|
| Q |
103 |
aaggaagacgattgataatgtggacagcagtaagagaagcttcacccc-aagcacgttcaggacaagaggctgagataagcatggcacggacagagtcaa |
201 |
Q |
| |
|
|||| |||| |||||| || |||| || |||||||| | ||||||||| |||||||||| ||||||||||||| |||||||||| |||| | ||||||| |
|
|
| T |
20670089 |
aagggagacaattgattatatggatagtagtaagagcatcttcacccccaagcacgttctggacaagaggctgggataagcatgacacgaattgagtcaa |
20670188 |
T |
|
| Q |
202 |
gaatgtgacgatgttttctctcagcactaccat |
234 |
Q |
| |
|
||||||||||||| ||||| ||| ||| ||||| |
|
|
| T |
20670189 |
gaatgtgacgatgctttctttcatcacgaccat |
20670221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 12544623 - 12544399
Alignment:
| Q |
3 |
aggaagacaaaacaagcacaaccaaacaacttaactaaattataatcaggtgtagtgtggtaaagacgctcaaaaggagagatattaccaaagatagatg |
102 |
Q |
| |
|
|||| |||||||||| ||||||||||| | || ||| ||||||| ||||||||| | || || ||| |||||||||||| |||||||| || ||| | |
|
|
| T |
12544623 |
aggaggacaaaacaatcacaaccaaactccatatataagttataatttggtgtagtgagatatagccgcccaaaaggagagacattaccaaggacagagg |
12544524 |
T |
|
| Q |
103 |
aaggaagacgattgataatgtggacagcagtaagagaagcttcaccccaagcacgttcaggacaagaggctgagataagcatggcacggacagagtcaag |
202 |
Q |
| |
|
|||| ||| ||||||| || || ||| ||||||||| ||||||||| | | | || |||||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
12544523 |
aagggagatgattgattatatgaacaacagtaagagcggcttcacccta-gtgtgatctggacaagatgctgaaataagcatggcacggactgagtcaag |
12544425 |
T |
|
| Q |
203 |
aatgtgacgatgttttctctcagcac |
228 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
12544424 |
aatgtgacgatgctttctctcagcac |
12544399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 15269256 - 15269193
Alignment:
| Q |
162 |
ggacaagaggctgagataagcatggcacggacagagtcaagaatgtgacgatgttttctctcagc |
226 |
Q |
| |
|
||||||||| |||||||||||||| ||| || ||||||||| ||||||||| ||||||||||| |
|
|
| T |
15269256 |
ggacaagag-ctgagataagcatgacacaaactaagtcaagaacgtgacgatgctttctctcagc |
15269193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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