View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_4 (Length: 575)
Name: NF10855A_low_4
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 10 - 575
Target Start/End: Complemental strand, 41912323 - 41911765
Alignment:
| Q |
10 |
cagagatacacagcgccacagcggtgcggtgagggttaatagggttcacatagttattgtggacttgtggtacctcctggaacatcattgcagacaatcc |
109 |
Q |
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| T |
41912323 |
cagagatacacagcgccacagcggtgcggtgcgggttaatagggttcacatagttattgtgg--------tacctcctggaacatcattgcagacaatcc |
41912232 |
T |
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| Q |
110 |
taacccgacaactcgacaaacaacactcatggctatttaattttgacgtctgaaaccaattctctattggcaccgacagtatcccaagtgataaatacct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41912231 |
taacccgacaactcgacaaacaacactcatggctatttaattttgacgtctgaaaccaattcactattggcaccgacagtatcccaagtgataaatacct |
41912132 |
T |
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| Q |
210 |
caaatcaaaattagtatgaaaataaaggaatactttatactctcactaaaaatatactaagtttttatattttgcagtatcagtataccagtacttgttg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41912131 |
caaatcaaaattagtatgaaaataaaggaatactttatactctcactaaaaatatactaagtttttatattttgcagtatcagtataccagtacttgttg |
41912032 |
T |
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| Q |
310 |
aagaaggaatacagtctattttgtgcaaaaatgtacgtactagtataacatgtactatatttctcaactgagttaaaattaatttcatcaaatactattt |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41912031 |
aagaaggaatacagtctattttgtgcaaaaatgtacgtactagtataacatgtactatatttctcaactgagttaaaattaatttcaacaaatactattt |
41911932 |
T |
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| Q |
410 |
tgagttgaattttatacattaacagcatatcactttccttcccctnnnnnnncattatcacttttcttaaac--aaataaaaaaggtaacaacacatcat |
507 |
Q |
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| T |
41911931 |
tgagttgaattttatacattaacagcatatcactttccttcccctaaaaaaaca-tatcactttacttaaacaaaaaaaaaaaaggtaacaacacatcat |
41911833 |
T |
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| Q |
508 |
actaatagtacgtgagaatattattacgctggtagtaatatgtgagaaacattttaaatttatactgt |
575 |
Q |
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| T |
41911832 |
actaatagtacgtgagaatattattacgctggtagcaatatgtgagaaacattttaaatttatactgt |
41911765 |
T |
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